Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0659

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0657 and Rru_A0658 are separated by 101 nucleotidesRru_A0658 and Rru_A0659 overlap by 58 nucleotidesRru_A0659 and Rru_A0660 overlap by 4 nucleotides Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094 _A0657 Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128 _A0658 Rru_A0659: Rru_A0659 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation (NCBI), at 781,071 to 783,371 _A0659 Rru_A0660: Rru_A0660 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 783,368 to 785,245 _A0660 Position (kb) 781 782 783 784Strain fitness (log2 ratio) -2 -1 0 1at 780.122 kb on - strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.135 kb on + strandat 780.136 kb on - strandat 780.136 kb on - strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.158 kb on + strandat 780.162 kb on + strandat 780.182 kb on + strandat 780.191 kb on + strandat 780.360 kb on + strand, within Rru_A0658at 780.361 kb on - strand, within Rru_A0658at 780.396 kb on + strand, within Rru_A0658at 780.397 kb on - strand, within Rru_A0658at 780.599 kb on - strand, within Rru_A0658at 780.736 kb on + strand, within Rru_A0658at 780.999 kb on + strand, within Rru_A0658at 781.000 kb on - strand, within Rru_A0658at 781.000 kb on - strand, within Rru_A0658at 781.091 kb on + strandat 781.091 kb on + strandat 781.092 kb on - strandat 781.195 kb on + strandat 781.195 kb on + strandat 781.196 kb on - strandat 781.196 kb on - strandat 781.196 kb on - strandat 781.325 kb on + strand, within Rru_A0659at 781.399 kb on + strand, within Rru_A0659at 781.400 kb on - strand, within Rru_A0659at 781.400 kb on - strand, within Rru_A0659at 781.414 kb on + strand, within Rru_A0659at 781.455 kb on - strand, within Rru_A0659at 781.491 kb on + strand, within Rru_A0659at 781.492 kb on - strand, within Rru_A0659at 781.709 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.930 kb on + strand, within Rru_A0659at 781.931 kb on - strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.332 kb on + strand, within Rru_A0659at 782.333 kb on - strand, within Rru_A0659at 782.546 kb on + strand, within Rru_A0659at 782.546 kb on + strand, within Rru_A0659at 782.547 kb on - strand, within Rru_A0659at 782.548 kb on + strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.549 kb on - strand, within Rru_A0659at 782.911 kb on + strand, within Rru_A0659at 782.977 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.992 kb on + strand, within Rru_A0659at 782.993 kb on - strand, within Rru_A0659at 782.993 kb on - strand, within Rru_A0659at 783.023 kb on - strand, within Rru_A0659at 783.170 kb on + strandat 783.171 kb on - strandat 783.191 kb on + strandat 783.192 kb on - strandat 783.194 kb on - strandat 783.194 kb on - strandat 783.217 kb on + strandat 783.218 kb on - strandat 783.449 kb on - strandat 783.519 kb on + strandat 783.519 kb on + strandat 783.520 kb on - strandat 783.568 kb on + strand, within Rru_A0660at 783.656 kb on + strand, within Rru_A0660at 783.656 kb on + strand, within Rru_A0660at 783.657 kb on - strand, within Rru_A0660at 783.657 kb on - strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.922 kb on + strand, within Rru_A0660at 783.923 kb on - strand, within Rru_A0660at 784.263 kb on + strand, within Rru_A0660

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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780,122 - -0.0
780,135 + -0.0
780,135 + -0.0
780,135 + -1.8
780,135 + -0.9
780,135 + -1.0
780,135 + -1.0
780,136 - -0.0
780,136 - -0.0
780,158 + -1.7
780,158 + -0.0
780,158 + -0.0
780,162 + -0.0
780,182 + -0.0
780,191 + -0.0
780,360 + Rru_A0658 0.18 -0.0
780,361 - Rru_A0658 0.18 -0.0
780,396 + Rru_A0658 0.21 -0.0
780,397 - Rru_A0658 0.22 -0.0
780,599 - Rru_A0658 0.43 -0.0
780,736 + Rru_A0658 0.58 -0.0
780,999 + Rru_A0658 0.86 -1.5
781,000 - Rru_A0658 0.86 -0.0
781,000 - Rru_A0658 0.86 -0.0
781,091 + -1.6
781,091 + -0.0
781,092 - -0.0
781,195 + -0.0
781,195 + -1.2
781,196 - -1.6
781,196 - -1.4
781,196 - -0.0
781,325 + Rru_A0659 0.11 -0.0
781,399 + Rru_A0659 0.14 -1.0
781,400 - Rru_A0659 0.14 -1.3
781,400 - Rru_A0659 0.14 -1.3
781,414 + Rru_A0659 0.15 -0.0
781,455 - Rru_A0659 0.17 -0.0
781,491 + Rru_A0659 0.18 -0.0
781,492 - Rru_A0659 0.18 -0.0
781,709 + Rru_A0659 0.28 -0.0
781,930 + Rru_A0659 0.37 -0.0
781,930 + Rru_A0659 0.37 -0.0
781,930 + Rru_A0659 0.37 -0.0
781,930 + Rru_A0659 0.37 -0.0
781,931 - Rru_A0659 0.37 -0.0
782,332 + Rru_A0659 0.55 -0.7
782,332 + Rru_A0659 0.55 -1.0
782,332 + Rru_A0659 0.55 -0.0
782,333 - Rru_A0659 0.55 -0.0
782,546 + Rru_A0659 0.64 -0.0
782,546 + Rru_A0659 0.64 -0.0
782,547 - Rru_A0659 0.64 -0.7
782,548 + Rru_A0659 0.64 -1.2
782,549 - Rru_A0659 0.64 -0.0
782,549 - Rru_A0659 0.64 -0.9
782,549 - Rru_A0659 0.64 -0.0
782,549 - Rru_A0659 0.64 -0.0
782,549 - Rru_A0659 0.64 -0.0
782,549 - Rru_A0659 0.64 -0.0
782,911 + Rru_A0659 0.80 -0.0
782,977 + Rru_A0659 0.83 -0.0
782,992 + Rru_A0659 0.83 -0.0
782,992 + Rru_A0659 0.83 -0.0
782,992 + Rru_A0659 0.83 -0.0
782,993 - Rru_A0659 0.84 -0.0
782,993 - Rru_A0659 0.84 -0.0
783,023 - Rru_A0659 0.85 -0.0
783,170 + -0.0
783,171 - -0.0
783,191 + -0.0
783,192 - -0.0
783,194 - -0.0
783,194 - -1.5
783,217 + -0.0
783,218 - -1.6
783,449 - -0.0
783,519 + -0.0
783,519 + -1.3
783,520 - -0.0
783,568 + Rru_A0660 0.11 -0.0
783,656 + Rru_A0660 0.15 -0.0
783,656 + Rru_A0660 0.15 -1.6
783,657 - Rru_A0660 0.15 -0.0
783,657 - Rru_A0660 0.15 -0.0
783,922 + Rru_A0660 0.29 -0.0
783,922 + Rru_A0660 0.29 -0.0
783,922 + Rru_A0660 0.29 -0.0
783,923 - Rru_A0660 0.30 -0.0
784,263 + Rru_A0660 0.48 -0.0

Or see this region's nucleotide sequence