Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0100 and Rru_A0101 are separated by 58 nucleotides Rru_A0101 and Rru_A0102 are separated by 60 nucleotides Rru_A0102 and Rru_A0103 are separated by 164 nucleotides Rru_A0103 and Rru_AR0002 are separated by 37 nucleotides Rru_AR0002 and Rru_A0104 are separated by 341 nucleotides
Rru_A0100: Rru_A0100 - hypothetical protein (NCBI), at 115,035 to 115,379
_A0100
Rru_A0101: Rru_A0101 - hypothetical protein (NCBI), at 115,438 to 116,010
_A0101
Rru_A0102: Rru_A0102 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 116,071 to 116,907
_A0102
Rru_A0103: Rru_A0103 - SlyX (NCBI), at 117,072 to 117,287
_A0103
Rru_AR0002: Rru_AR0002 - tRNA-Arg (NCBI), at 117,325 to 117,401
_AR0002
Rru_A0104: Rru_A0104 - Alpha-2-macroglobulin-like protein (NCBI), at 117,743 to 123,022
_A0104
Position (kb) 116
117 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 115.280 kb on - strand, within Rru_A0100 at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.347 kb on + strand at 115.348 kb on - strand at 115.348 kb on - strand at 115.348 kb on - strand at 115.348 kb on - strand at 115.471 kb on + strand at 115.471 kb on + strand at 115.472 kb on - strand at 115.472 kb on - strand at 115.472 kb on - strand at 115.518 kb on + strand, within Rru_A0101 at 115.519 kb on - strand, within Rru_A0101 at 115.520 kb on + strand, within Rru_A0101 at 115.521 kb on - strand, within Rru_A0101 at 115.538 kb on - strand, within Rru_A0101 at 115.595 kb on + strand, within Rru_A0101 at 115.595 kb on + strand, within Rru_A0101 at 115.596 kb on - strand, within Rru_A0101 at 115.596 kb on - strand, within Rru_A0101 at 115.635 kb on - strand, within Rru_A0101 at 115.785 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.787 kb on + strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.788 kb on - strand, within Rru_A0101 at 115.868 kb on + strand, within Rru_A0101 at 115.868 kb on + strand, within Rru_A0101 at 115.869 kb on - strand, within Rru_A0101 at 115.869 kb on - strand, within Rru_A0101 at 115.869 kb on - strand, within Rru_A0101 at 115.869 kb on - strand, within Rru_A0101 at 116.086 kb on - strand at 116.111 kb on + strand at 116.111 kb on + strand at 116.112 kb on - strand at 116.307 kb on + strand, within Rru_A0102 at 116.307 kb on + strand, within Rru_A0102 at 116.308 kb on - strand, within Rru_A0102 at 116.308 kb on - strand, within Rru_A0102 at 116.417 kb on + strand, within Rru_A0102 at 116.427 kb on + strand, within Rru_A0102 at 116.427 kb on + strand, within Rru_A0102 at 116.428 kb on - strand, within Rru_A0102 at 116.429 kb on + strand, within Rru_A0102 at 116.429 kb on + strand, within Rru_A0102 at 116.429 kb on + strand, within Rru_A0102 at 116.430 kb on - strand, within Rru_A0102 at 116.430 kb on - strand, within Rru_A0102 at 116.430 kb on - strand, within Rru_A0102 at 116.430 kb on - strand, within Rru_A0102 at 116.430 kb on - strand, within Rru_A0102 at 116.619 kb on + strand, within Rru_A0102 at 116.619 kb on + strand, within Rru_A0102 at 116.620 kb on - strand, within Rru_A0102 at 116.620 kb on - strand, within Rru_A0102 at 116.620 kb on - strand, within Rru_A0102 at 116.975 kb on + strand at 116.976 kb on - strand at 116.991 kb on + strand at 116.991 kb on + strand at 116.991 kb on + strand at 116.992 kb on - strand at 116.992 kb on - strand at 116.992 kb on - strand at 116.992 kb on - strand at 117.017 kb on + strand at 117.018 kb on - strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.067 kb on + strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.068 kb on - strand at 117.266 kb on + strand at 117.266 kb on + strand at 117.282 kb on + strand at 117.282 kb on + strand at 117.283 kb on - strand at 117.421 kb on - strand at 117.421 kb on - strand at 117.479 kb on + strand at 117.479 kb on + strand at 117.551 kb on + strand at 117.551 kb on + strand at 117.551 kb on + strand at 117.634 kb on - strand at 117.634 kb on - strand at 117.649 kb on + strand at 117.649 kb on + strand at 117.652 kb on + strand at 117.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 115,280 - Rru_A0100 0.71 -0.8 115,347 + -0.5 115,347 + -1.6 115,347 + +0.0 115,347 + +0.0 115,347 + +0.0 115,347 + -0.8 115,347 + +0.0 115,347 + +0.0 115,347 + -1.6 115,347 + -0.8 115,347 + +0.0 115,348 - -1.0 115,348 - -1.0 115,348 - +0.0 115,348 - -1.6 115,471 + +0.0 115,471 + -2.3 115,472 - +6.0 115,472 - +0.0 115,472 - +0.0 115,518 + Rru_A0101 0.14 +0.0 115,519 - Rru_A0101 0.14 +0.0 115,520 + Rru_A0101 0.14 -0.6 115,521 - Rru_A0101 0.14 +0.0 115,538 - Rru_A0101 0.17 +0.0 115,595 + Rru_A0101 0.27 +0.0 115,595 + Rru_A0101 0.27 +0.0 115,596 - Rru_A0101 0.28 +0.0 115,596 - Rru_A0101 0.28 +0.0 115,635 - Rru_A0101 0.34 +0.0 115,785 + Rru_A0101 0.61 -1.4 115,787 + Rru_A0101 0.61 +0.0 115,787 + Rru_A0101 0.61 -1.3 115,787 + Rru_A0101 0.61 -1.0 115,787 + Rru_A0101 0.61 -0.7 115,787 + Rru_A0101 0.61 +0.0 115,787 + Rru_A0101 0.61 -1.1 115,788 - Rru_A0101 0.61 +0.0 115,788 - Rru_A0101 0.61 +0.0 115,788 - Rru_A0101 0.61 +6.9 115,788 - Rru_A0101 0.61 +0.0 115,788 - Rru_A0101 0.61 +4.1 115,788 - Rru_A0101 0.61 -1.0 115,868 + Rru_A0101 0.75 +0.0 115,868 + Rru_A0101 0.75 +0.0 115,869 - Rru_A0101 0.75 +0.0 115,869 - Rru_A0101 0.75 +0.0 115,869 - Rru_A0101 0.75 +0.0 115,869 - Rru_A0101 0.75 +6.0 116,086 - +0.0 116,111 + +0.0 116,111 + +0.0 116,112 - +0.0 116,307 + Rru_A0102 0.28 +0.0 116,307 + Rru_A0102 0.28 +0.0 116,308 - Rru_A0102 0.28 +0.0 116,308 - Rru_A0102 0.28 +0.0 116,417 + Rru_A0102 0.41 +0.0 116,427 + Rru_A0102 0.43 +0.0 116,427 + Rru_A0102 0.43 +0.0 116,428 - Rru_A0102 0.43 -1.4 116,429 + Rru_A0102 0.43 +0.0 116,429 + Rru_A0102 0.43 -1.0 116,429 + Rru_A0102 0.43 +0.0 116,430 - Rru_A0102 0.43 +0.0 116,430 - Rru_A0102 0.43 +0.0 116,430 - Rru_A0102 0.43 +0.0 116,430 - Rru_A0102 0.43 +0.0 116,430 - Rru_A0102 0.43 -1.7 116,619 + Rru_A0102 0.65 -1.6 116,619 + Rru_A0102 0.65 +0.0 116,620 - Rru_A0102 0.66 -1.3 116,620 - Rru_A0102 0.66 +0.0 116,620 - Rru_A0102 0.66 +0.0 116,975 + +0.0 116,976 - +0.0 116,991 + +0.0 116,991 + -1.7 116,991 + +0.0 116,992 - -1.2 116,992 - +0.0 116,992 - -0.5 116,992 - -1.2 117,017 + +0.0 117,018 - -1.2 117,067 + +0.0 117,067 + -1.4 117,067 + -1.9 117,067 + +0.0 117,067 + +0.0 117,067 + +0.0 117,067 + +0.0 117,068 - +0.6 117,068 - +0.0 117,068 - +0.0 117,068 - -1.4 117,068 - +0.0 117,068 - +0.0 117,068 - -1.0 117,068 - +0.0 117,068 - -1.6 117,266 + +0.0 117,266 + +0.0 117,282 + -1.1 117,282 + -1.0 117,283 - +0.0 117,421 - +0.0 117,421 - -1.6 117,479 + +0.0 117,479 + -1.6 117,551 + -1.0 117,551 + -1.7 117,551 + +0.0 117,634 - +0.0 117,634 - +0.0 117,649 + +0.0 117,649 + -1.5 117,652 + -1.0 117,661 - +0.0
Or see this region's nucleotide sequence