Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0100

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0099 and Rru_A0100 are separated by 14 nucleotidesRru_A0100 and Rru_A0101 are separated by 58 nucleotidesRru_A0101 and Rru_A0102 are separated by 60 nucleotides Rru_A0099: Rru_A0099 - Serine phosphatase (NCBI), at 113,029 to 115,020 _A0099 Rru_A0100: Rru_A0100 - hypothetical protein (NCBI), at 115,035 to 115,379 _A0100 Rru_A0101: Rru_A0101 - hypothetical protein (NCBI), at 115,438 to 116,010 _A0101 Rru_A0102: Rru_A0102 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 116,071 to 116,907 _A0102 Position (kb) 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 114.112 kb on + strand, within Rru_A0099at 114.113 kb on - strand, within Rru_A0099at 114.307 kb on + strand, within Rru_A0099at 114.308 kb on - strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.460 kb on + strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.461 kb on - strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.602 kb on + strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.603 kb on - strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.749 kb on + strand, within Rru_A0099at 114.798 kb on - strand, within Rru_A0099at 114.798 kb on - strand, within Rru_A0099at 114.831 kb on + strandat 114.831 kb on + strandat 114.890 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.953 kb on + strandat 114.954 kb on - strandat 114.954 kb on - strandat 114.954 kb on - strandat 114.954 kb on - strandat 115.280 kb on - strand, within Rru_A0100at 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.347 kb on + strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.348 kb on - strandat 115.471 kb on + strandat 115.471 kb on + strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.472 kb on - strandat 115.518 kb on + strand, within Rru_A0101at 115.519 kb on - strand, within Rru_A0101at 115.520 kb on + strand, within Rru_A0101at 115.521 kb on - strand, within Rru_A0101at 115.538 kb on - strand, within Rru_A0101at 115.595 kb on + strand, within Rru_A0101at 115.595 kb on + strand, within Rru_A0101at 115.596 kb on - strand, within Rru_A0101at 115.596 kb on - strand, within Rru_A0101at 115.635 kb on - strand, within Rru_A0101at 115.785 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.787 kb on + strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.788 kb on - strand, within Rru_A0101at 115.868 kb on + strand, within Rru_A0101at 115.868 kb on + strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 115.869 kb on - strand, within Rru_A0101at 116.086 kb on - strandat 116.111 kb on + strandat 116.111 kb on + strandat 116.112 kb on - strandat 116.307 kb on + strand, within Rru_A0102at 116.307 kb on + strand, within Rru_A0102at 116.308 kb on - strand, within Rru_A0102at 116.308 kb on - strand, within Rru_A0102

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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114,112 + Rru_A0099 0.54 -1.1
114,113 - Rru_A0099 0.54 -1.7
114,307 + Rru_A0099 0.64 +0.0
114,308 - Rru_A0099 0.64 +0.0
114,460 + Rru_A0099 0.72 +0.0
114,460 + Rru_A0099 0.72 -0.8
114,460 + Rru_A0099 0.72 -0.7
114,460 + Rru_A0099 0.72 +0.0
114,460 + Rru_A0099 0.72 -1.1
114,460 + Rru_A0099 0.72 +0.5
114,461 - Rru_A0099 0.72 -1.0
114,461 - Rru_A0099 0.72 +0.0
114,461 - Rru_A0099 0.72 +0.0
114,461 - Rru_A0099 0.72 +0.0
114,602 + Rru_A0099 0.79 +0.0
114,602 + Rru_A0099 0.79 +0.0
114,602 + Rru_A0099 0.79 -2.0
114,602 + Rru_A0099 0.79 -1.1
114,602 + Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 -1.0
114,603 - Rru_A0099 0.79 -1.2
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,603 - Rru_A0099 0.79 +0.0
114,749 + Rru_A0099 0.86 +0.0
114,749 + Rru_A0099 0.86 -3.7
114,749 + Rru_A0099 0.86 +0.0
114,749 + Rru_A0099 0.86 +0.0
114,798 - Rru_A0099 0.89 -0.9
114,798 - Rru_A0099 0.89 -0.1
114,831 + +0.0
114,831 + -0.9
114,890 + +0.0
114,953 + -1.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,953 + +0.0
114,954 - -1.7
114,954 - -1.0
114,954 - -1.5
114,954 - +0.0
115,280 - Rru_A0100 0.71 -0.8
115,347 + -0.5
115,347 + -1.6
115,347 + +0.0
115,347 + +0.0
115,347 + +0.0
115,347 + -0.8
115,347 + +0.0
115,347 + +0.0
115,347 + -1.6
115,347 + -0.8
115,347 + +0.0
115,348 - -1.0
115,348 - -1.0
115,348 - +0.0
115,348 - -1.6
115,471 + +0.0
115,471 + -2.3
115,472 - +6.0
115,472 - +0.0
115,472 - +0.0
115,518 + Rru_A0101 0.14 +0.0
115,519 - Rru_A0101 0.14 +0.0
115,520 + Rru_A0101 0.14 -0.6
115,521 - Rru_A0101 0.14 +0.0
115,538 - Rru_A0101 0.17 +0.0
115,595 + Rru_A0101 0.27 +0.0
115,595 + Rru_A0101 0.27 +0.0
115,596 - Rru_A0101 0.28 +0.0
115,596 - Rru_A0101 0.28 +0.0
115,635 - Rru_A0101 0.34 +0.0
115,785 + Rru_A0101 0.61 -1.4
115,787 + Rru_A0101 0.61 +0.0
115,787 + Rru_A0101 0.61 -1.3
115,787 + Rru_A0101 0.61 -1.0
115,787 + Rru_A0101 0.61 -0.7
115,787 + Rru_A0101 0.61 +0.0
115,787 + Rru_A0101 0.61 -1.1
115,788 - Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 +6.9
115,788 - Rru_A0101 0.61 +0.0
115,788 - Rru_A0101 0.61 +4.1
115,788 - Rru_A0101 0.61 -1.0
115,868 + Rru_A0101 0.75 +0.0
115,868 + Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +0.0
115,869 - Rru_A0101 0.75 +6.0
116,086 - +0.0
116,111 + +0.0
116,111 + +0.0
116,112 - +0.0
116,307 + Rru_A0102 0.28 +0.0
116,307 + Rru_A0102 0.28 +0.0
116,308 - Rru_A0102 0.28 +0.0
116,308 - Rru_A0102 0.28 +0.0

Or see this region's nucleotide sequence