Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0096 and Rru_A0097 are separated by 156 nucleotides Rru_A0097 and Rru_A0098 are separated by 56 nucleotides Rru_A0098 and Rru_A0099 are separated by 80 nucleotides
Rru_A0096: Rru_A0096 - Secretion protein HlyD (NCBI), at 110,136 to 111,101
_A0096
Rru_A0097: Rru_A0097 - Class I peptide chain release factor (NCBI), at 111,258 to 111,680
_A0097
Rru_A0098: Rru_A0098 - Cystathionine gamma-synthase (NCBI), at 111,737 to 112,948
_A0098
Rru_A0099: Rru_A0099 - Serine phosphatase (NCBI), at 113,029 to 115,020
_A0099
Position (kb) 111
112
113 Strain fitness (log2 ratio) -2
-1
0
1 at 111.186 kb on + strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.187 kb on - strand at 111.260 kb on - strand at 111.534 kb on + strand, within Rru_A0097 at 111.582 kb on + strand, within Rru_A0097 at 111.583 kb on - strand, within Rru_A0097 at 111.691 kb on + strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.692 kb on - strand at 111.738 kb on + strand at 111.738 kb on + strand at 111.835 kb on - strand at 111.897 kb on + strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.898 kb on - strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.936 kb on + strand, within Rru_A0098 at 111.937 kb on - strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.110 kb on + strand, within Rru_A0098 at 112.111 kb on - strand, within Rru_A0098 at 112.309 kb on - strand, within Rru_A0098 at 112.309 kb on - strand, within Rru_A0098 at 112.573 kb on + strand, within Rru_A0098 at 112.603 kb on - strand, within Rru_A0098 at 112.765 kb on + strand, within Rru_A0098 at 112.767 kb on + strand, within Rru_A0098 at 113.085 kb on + strand at 113.180 kb on + strand at 113.181 kb on - strand at 113.225 kb on + strand at 113.226 kb on - strand at 113.226 kb on - strand at 113.226 kb on - strand at 113.287 kb on - strand, within Rru_A0099 at 113.287 kb on - strand, within Rru_A0099 at 113.424 kb on - strand, within Rru_A0099 at 113.424 kb on - strand, within Rru_A0099 at 113.472 kb on + strand, within Rru_A0099 at 113.472 kb on + strand, within Rru_A0099 at 113.473 kb on - strand, within Rru_A0099 at 113.473 kb on - strand, within Rru_A0099 at 113.473 kb on - strand, within Rru_A0099 at 113.473 kb on - strand, within Rru_A0099 at 113.651 kb on + strand, within Rru_A0099 at 113.651 kb on + strand, within Rru_A0099 at 113.651 kb on + strand, within Rru_A0099 at 113.652 kb on - strand, within Rru_A0099 at 113.652 kb on - strand, within Rru_A0099 at 113.652 kb on - strand, within Rru_A0099 at 113.652 kb on - strand, within Rru_A0099 at 113.655 kb on - strand, within Rru_A0099 at 113.655 kb on - strand, within Rru_A0099 at 113.655 kb on - strand, within Rru_A0099 at 113.931 kb on + strand, within Rru_A0099
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 111,186 + +0.0 111,187 - +0.0 111,187 - -1.3 111,187 - +0.0 111,260 - +0.0 111,534 + Rru_A0097 0.65 -1.6 111,582 + Rru_A0097 0.77 +0.0 111,583 - Rru_A0097 0.77 -2.3 111,691 + +0.0 111,692 - +0.0 111,692 - -1.0 111,692 - -1.5 111,738 + +0.0 111,738 + +0.0 111,835 - +0.0 111,897 + Rru_A0098 0.13 +0.0 111,898 - Rru_A0098 0.13 +0.0 111,898 - Rru_A0098 0.13 +0.0 111,898 - Rru_A0098 0.13 +0.0 111,898 - Rru_A0098 0.13 -1.5 111,898 - Rru_A0098 0.13 +0.0 111,898 - Rru_A0098 0.13 -1.0 111,936 + Rru_A0098 0.16 -1.2 111,936 + Rru_A0098 0.16 +0.0 111,937 - Rru_A0098 0.17 +0.0 112,110 + Rru_A0098 0.31 -0.9 112,110 + Rru_A0098 0.31 +0.0 112,110 + Rru_A0098 0.31 +0.0 112,111 - Rru_A0098 0.31 -0.6 112,309 - Rru_A0098 0.47 -1.0 112,309 - Rru_A0098 0.47 +0.0 112,573 + Rru_A0098 0.69 +0.0 112,603 - Rru_A0098 0.71 +0.0 112,765 + Rru_A0098 0.85 +0.0 112,767 + Rru_A0098 0.85 +0.0 113,085 + +0.0 113,180 + +0.0 113,181 - +0.0 113,225 + +0.0 113,226 - +0.0 113,226 - +0.0 113,226 - +0.0 113,287 - Rru_A0099 0.13 +0.0 113,287 - Rru_A0099 0.13 +0.0 113,424 - Rru_A0099 0.20 -0.8 113,424 - Rru_A0099 0.20 -0.6 113,472 + Rru_A0099 0.22 -1.3 113,472 + Rru_A0099 0.22 -1.7 113,473 - Rru_A0099 0.22 +0.0 113,473 - Rru_A0099 0.22 -1.1 113,473 - Rru_A0099 0.22 +0.0 113,473 - Rru_A0099 0.22 +0.0 113,651 + Rru_A0099 0.31 +0.0 113,651 + Rru_A0099 0.31 +0.0 113,651 + Rru_A0099 0.31 +0.0 113,652 - Rru_A0099 0.31 +0.0 113,652 - Rru_A0099 0.31 +0.0 113,652 - Rru_A0099 0.31 -1.1 113,652 - Rru_A0099 0.31 +0.0 113,655 - Rru_A0099 0.31 +0.0 113,655 - Rru_A0099 0.31 -1.2 113,655 - Rru_A0099 0.31 +0.0 113,931 + Rru_A0099 0.45 +0.0
Or see this region's nucleotide sequence