Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08300

Experiment: H2 deepwell acetate FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08295 and MMP_RS08300 are separated by 69 nucleotidesMMP_RS08300 and MMP_RS08305 are separated by 85 nucleotides MMP_RS08295: MMP_RS08295 - histidine--tRNA ligase, at 1,559,794 to 1,561,044 _RS08295 MMP_RS08300: MMP_RS08300 - metal-sulfur cluster assembly factor, at 1,561,114 to 1,561,413 _RS08300 MMP_RS08305: MMP_RS08305 - aspartate--tRNA(Asn) ligase, at 1,561,499 to 1,562,815 _RS08305 Position (kb) 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1at 1560.293 kb on + strandat 1560.395 kb on + strandat 1560.481 kb on + strandat 1560.746 kb on - strandat 1560.902 kb on + strandat 1561.045 kb on - strandat 1561.087 kb on - strandat 1561.089 kb on - strandat 1561.091 kb on - strandat 1561.092 kb on + strandat 1561.092 kb on + strandat 1561.155 kb on - strand, within MMP_RS08300at 1561.327 kb on - strand, within MMP_RS08300at 1561.330 kb on + strand, within MMP_RS08300at 1561.414 kb on + strandat 1561.437 kb on + strandat 1561.442 kb on + strandat 1561.470 kb on - strandat 1561.474 kb on + strandat 1561.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 deepwell acetate FREE
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1,560,293 + -1.8
1,560,395 + -0.6
1,560,481 + -0.7
1,560,746 - +0.4
1,560,902 + -1.5
1,561,045 - -0.5
1,561,087 - -2.3
1,561,089 - -2.9
1,561,091 - -1.4
1,561,092 + -0.7
1,561,092 + -1.5
1,561,155 - MMP_RS08300 0.14 -1.1
1,561,327 - MMP_RS08300 0.71 -0.5
1,561,330 + MMP_RS08300 0.72 -0.1
1,561,414 + -2.4
1,561,437 + -0.8
1,561,442 + -1.3
1,561,470 - +1.0
1,561,474 + +1.7
1,561,702 + +0.8

Or see this region's nucleotide sequence