Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09920

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,179,030	+		LRK54_RS09915	0.13	-0.8
2,179,065	+		LRK54_RS09915	0.17	+0.0
2,179,065	+		LRK54_RS09915	0.17	-0.8
2,179,065	+		LRK54_RS09915	0.17	+0.7
2,179,065	+		LRK54_RS09915	0.17	-0.3
2,179,065	+		LRK54_RS09915	0.17	+0.4
2,179,066	-		LRK54_RS09915	0.17	-0.4
2,179,066	-		LRK54_RS09915	0.17	+0.4
2,179,066	-		LRK54_RS09915	0.17	+0.0
2,179,066	-		LRK54_RS09915	0.17	+0.3
2,179,066	-		LRK54_RS09915	0.17	-0.9
2,179,250	+		LRK54_RS09915	0.35	-0.1
2,179,250	+		LRK54_RS09915	0.35	+0.8
2,179,250	+		LRK54_RS09915	0.35	+0.4
2,179,250	+		LRK54_RS09915	0.35	+2.9
2,179,251	-		LRK54_RS09915	0.35	-0.8
2,179,310	+		LRK54_RS09915	0.40	-0.5
2,179,310	+		LRK54_RS09915	0.40	-0.1
2,179,310	+		LRK54_RS09915	0.40	-2.6
2,179,310	+		LRK54_RS09915	0.40	+0.2
2,179,310	+		LRK54_RS09915	0.40	-1.2
2,179,310	+		LRK54_RS09915	0.40	-2.3
2,179,310	+		LRK54_RS09915	0.40	-0.5
2,179,310	+		LRK54_RS09915	0.40	+0.6
2,179,310	+		LRK54_RS09915	0.40	-1.8
2,179,310	+		LRK54_RS09915	0.40	-0.2
2,179,310	+		LRK54_RS09915	0.40	-0.6
2,179,310	+		LRK54_RS09915	0.40	-0.9
2,179,310	+		LRK54_RS09915	0.40	-1.2
2,179,310	+		LRK54_RS09915	0.40	-0.6
2,179,310	+		LRK54_RS09915	0.40	-0.4
2,179,311	-		LRK54_RS09915	0.41	-0.9
2,179,311	-		LRK54_RS09915	0.41	-0.2
2,179,311	-		LRK54_RS09915	0.41	-1.1
2,179,311	-		LRK54_RS09915	0.41	+0.5
2,179,311	-		LRK54_RS09915	0.41	-1.2
2,179,311	-		LRK54_RS09915	0.41	-0.0
2,179,311	-		LRK54_RS09915	0.41	+0.8
2,179,311	-		LRK54_RS09915	0.41	+0.7
2,179,311	-		LRK54_RS09915	0.41	-0.1
2,179,311	-		LRK54_RS09915	0.41	+0.6
2,179,311	-		LRK54_RS09915	0.41	-0.1
2,179,311	-		LRK54_RS09915	0.41	-0.5
2,179,311	-		LRK54_RS09915	0.41	+0.9
2,179,311	-		LRK54_RS09915	0.41	+0.5
2,179,311	-		LRK54_RS09915	0.41	+0.3
2,179,311	-		LRK54_RS09915	0.41	-0.6
2,179,311	-		LRK54_RS09915	0.41	-0.1
2,179,340	+		LRK54_RS09915	0.43	-0.5
2,179,340	+		LRK54_RS09915	0.43	+0.8
2,179,340	+		LRK54_RS09915	0.43	+0.2
2,179,340	+		LRK54_RS09915	0.43	-0.4
2,179,340	+		LRK54_RS09915	0.43	-0.1
2,179,340	+		LRK54_RS09915	0.43	-0.3
2,179,340	+		LRK54_RS09915	0.43	-1.3
2,179,340	+		LRK54_RS09915	0.43	-0.1
2,179,340	+		LRK54_RS09915	0.43	+0.9
2,179,340	+		LRK54_RS09915	0.43	+0.3
2,179,340	+		LRK54_RS09915	0.43	-0.4
2,179,340	+		LRK54_RS09915	0.43	-0.4
2,179,340	+		LRK54_RS09915	0.43	-0.3
2,179,340	+		LRK54_RS09915	0.43	+0.3
2,179,340	+		LRK54_RS09915	0.43	-0.3
2,179,341	-		LRK54_RS09915	0.43	+1.7
2,179,341	-		LRK54_RS09915	0.43	+0.4
2,179,341	-		LRK54_RS09915	0.43	-0.6
2,179,341	-		LRK54_RS09915	0.43	+0.5
2,179,341	-		LRK54_RS09915	0.43	-1.1
2,179,341	-		LRK54_RS09915	0.43	-0.6
2,179,400	+		LRK54_RS09915	0.49	+0.1
2,179,400	+		LRK54_RS09915	0.49	+0.4
2,179,400	+		LRK54_RS09915	0.49	-1.6
2,179,400	+		LRK54_RS09915	0.49	-1.3
2,179,400	+		LRK54_RS09915	0.49	-0.4
2,179,400	+		LRK54_RS09915	0.49	-0.3
2,179,400	+		LRK54_RS09915	0.49	-0.3
2,179,400	+		LRK54_RS09915	0.49	+0.5
2,179,400	+		LRK54_RS09915	0.49	-0.3
2,179,400	+		LRK54_RS09915	0.49	+0.6
2,179,401	-		LRK54_RS09915	0.49	+0.4
2,179,401	-		LRK54_RS09915	0.49	-0.7
2,179,401	-		LRK54_RS09915	0.49	-0.3
2,179,401	-		LRK54_RS09915	0.49	-1.0
2,179,401	-		LRK54_RS09915	0.49	-0.4
2,179,401	-		LRK54_RS09915	0.49	-0.2
2,179,401	-		LRK54_RS09915	0.49	-0.3
2,179,401	-		LRK54_RS09915	0.49	+0.6
2,179,401	-		LRK54_RS09915	0.49	+0.8
2,179,401	-		LRK54_RS09915	0.49	-0.3
2,179,456	+		LRK54_RS09915	0.55	-1.4
2,179,456	+		LRK54_RS09915	0.55	-0.5
2,179,456	+		LRK54_RS09915	0.55	+0.2
2,179,456	+		LRK54_RS09915	0.55	-1.8
2,179,456	+		LRK54_RS09915	0.55	+0.7
2,179,457	-		LRK54_RS09915	0.55	+0.1
2,179,457	-		LRK54_RS09915	0.55	+0.1
2,179,457	-		LRK54_RS09915	0.55	+0.2
2,179,457	-		LRK54_RS09915	0.55	+0.4
2,179,457	-		LRK54_RS09915	0.55	-0.1
2,179,457	-		LRK54_RS09915	0.55	-0.8
2,179,457	-		LRK54_RS09915	0.55	-1.6
2,179,457	-		LRK54_RS09915	0.55	-0.2
2,179,505	+		LRK54_RS09915	0.60	-1.5
2,179,505	+		LRK54_RS09915	0.60	-0.1
2,179,505	+		LRK54_RS09915	0.60	-0.4
2,179,505	+		LRK54_RS09915	0.60	+0.5
2,179,505	+		LRK54_RS09915	0.60	-1.5
2,179,505	+		LRK54_RS09915	0.60	-0.8
2,179,505	+		LRK54_RS09915	0.60	-0.1
2,179,506	-		LRK54_RS09915	0.60	-0.4
2,179,506	-		LRK54_RS09915	0.60	+2.3
2,179,506	-		LRK54_RS09915	0.60	-1.2
2,179,506	-		LRK54_RS09915	0.60	-0.0
2,179,506	-		LRK54_RS09915	0.60	-0.6
2,179,506	-		LRK54_RS09915	0.60	-0.6
2,179,506	-		LRK54_RS09915	0.60	-0.1
2,179,506	-		LRK54_RS09915	0.60	-0.6
2,179,868	+				-1.2
2,179,868	+				+0.1
2,179,868	+				+0.4
2,179,868	+				-0.1
2,179,869	-				+0.5
2,179,869	-				-0.6
2,179,895	+				-1.1
2,179,896	-				-2.2
2,179,981	+				+0.4
2,179,981	+				-1.4
2,179,981	+				-1.0
2,179,981	+				+1.2
2,179,981	+				-0.0
2,179,981	+				-1.0
2,179,981	+				+0.4
2,179,981	+				+2.3
2,179,981	+				+0.4
2,179,982	-				-2.2
2,179,982	-				-0.2
2,179,982	-				-0.5
2,179,982	-				+0.1
2,179,982	-				+0.1
2,179,982	-				-1.0
2,180,233	+		LRK54_RS09920	0.24	+0.1
2,180,233	+		LRK54_RS09920	0.24	+0.5
2,180,233	+		LRK54_RS09920	0.24	-0.3
2,180,233	+		LRK54_RS09920	0.24	+0.7
2,180,233	+		LRK54_RS09920	0.24	-0.0
2,180,233	+		LRK54_RS09920	0.24	-0.6
2,180,233	+		LRK54_RS09920	0.24	-0.1
2,180,233	+		LRK54_RS09920	0.24	-0.1
2,180,233	+		LRK54_RS09920	0.24	+0.6
2,180,233	+		LRK54_RS09920	0.24	-0.9
2,180,233	+		LRK54_RS09920	0.24	-0.4
2,180,233	+		LRK54_RS09920	0.24	+1.1
2,180,233	+		LRK54_RS09920	0.24	-0.5
2,180,234	-		LRK54_RS09920	0.24	+0.2
2,180,234	-		LRK54_RS09920	0.24	-0.8
2,180,234	-		LRK54_RS09920	0.24	+0.1
2,180,234	-		LRK54_RS09920	0.24	-1.2
2,180,234	-		LRK54_RS09920	0.24	-0.1
2,180,234	-		LRK54_RS09920	0.24	+0.1
2,180,234	-		LRK54_RS09920	0.24	-0.6
2,180,234	-		LRK54_RS09920	0.24	-0.2
2,180,290	+		LRK54_RS09920	0.30	-1.1
2,180,290	+		LRK54_RS09920	0.30	-0.6
2,180,291	-		LRK54_RS09920	0.30	-0.3
2,180,291	-		LRK54_RS09920	0.30	-0.1
2,180,291	-		LRK54_RS09920	0.30	-0.4
2,180,291	-		LRK54_RS09920	0.30	+0.6
2,180,291	-		LRK54_RS09920	0.30	-1.6
2,180,323	+		LRK54_RS09920	0.33	-0.5
2,180,323	+		LRK54_RS09920	0.33	-0.2
2,180,323	+		LRK54_RS09920	0.33	-0.7
2,180,323	+		LRK54_RS09920	0.33	+0.6
2,180,323	+		LRK54_RS09920	0.33	-0.0
2,180,323	+		LRK54_RS09920	0.33	+0.1
2,180,323	+		LRK54_RS09920	0.33	+0.4
2,180,323	+		LRK54_RS09920	0.33	+0.9
2,180,324	-		LRK54_RS09920	0.34	+0.3
2,180,324	-		LRK54_RS09920	0.34	-0.1
2,180,324	-		LRK54_RS09920	0.34	-0.1
2,180,324	-		LRK54_RS09920	0.34	-0.3
2,180,324	-		LRK54_RS09920	0.34	-1.5
2,180,324	-		LRK54_RS09920	0.34	-0.1
2,180,324	-		LRK54_RS09920	0.34	+2.1
2,180,324	-		LRK54_RS09920	0.34	-0.6
2,180,324	-		LRK54_RS09920	0.34	+0.1
2,180,324	-		LRK54_RS09920	0.34	-0.8
2,180,324	-		LRK54_RS09920	0.34	+0.1
2,180,324	-		LRK54_RS09920	0.34	-0.1
2,180,324	-		LRK54_RS09920	0.34	-0.8
2,180,324	-		LRK54_RS09920	0.34	+1.7
2,180,324	-		LRK54_RS09920	0.34	+0.7
2,180,324	-		LRK54_RS09920	0.34	+0.1
2,180,324	-		LRK54_RS09920	0.34	-1.1
2,180,326	+		LRK54_RS09920	0.34	-0.5
2,180,326	+		LRK54_RS09920	0.34	-0.3
2,180,326	+		LRK54_RS09920	0.34	-0.5
2,180,326	+		LRK54_RS09920	0.34	+0.2
2,180,326	+		LRK54_RS09920	0.34	+0.8
2,180,326	+		LRK54_RS09920	0.34	-0.9
2,180,326	+		LRK54_RS09920	0.34	+0.1
2,180,326	+		LRK54_RS09920	0.34	-0.2
2,180,326	+		LRK54_RS09920	0.34	-0.4
2,180,326	+		LRK54_RS09920	0.34	-0.3
2,180,326	+		LRK54_RS09920	0.34	-0.1
2,180,326	+		LRK54_RS09920	0.34	+0.9
2,180,326	+		LRK54_RS09920	0.34	-1.3
2,180,326	+		LRK54_RS09920	0.34	-0.8
2,180,327	-		LRK54_RS09920	0.34	+0.5
2,180,327	-		LRK54_RS09920	0.34	-0.3
2,180,327	-		LRK54_RS09920	0.34	+0.1
2,180,327	-		LRK54_RS09920	0.34	-0.9
2,180,327	-		LRK54_RS09920	0.34	-0.1
2,180,327	-		LRK54_RS09920	0.34	+1.4
2,180,327	-		LRK54_RS09920	0.34	+0.8
2,180,327	-		LRK54_RS09920	0.34	+0.5
2,180,327	-		LRK54_RS09920	0.34	-0.4
2,180,327	-		LRK54_RS09920	0.34	+1.4
2,180,381	-		LRK54_RS09920	0.40	+3.5
2,180,381	-		LRK54_RS09920	0.40	+0.5
2,180,404	+		LRK54_RS09920	0.42	+0.4
2,180,404	+		LRK54_RS09920	0.42	+0.7
2,180,404	+		LRK54_RS09920	0.42	-0.9
2,180,404	+		LRK54_RS09920	0.42	-0.9
2,180,404	+		LRK54_RS09920	0.42	+0.8
2,180,404	+		LRK54_RS09920	0.42	-0.6
2,180,404	+		LRK54_RS09920	0.42	-0.7
2,180,404	+		LRK54_RS09920	0.42	-0.7
2,180,404	+		LRK54_RS09920	0.42	+0.7
2,180,404	+		LRK54_RS09920	0.42	+0.6
2,180,404	+		LRK54_RS09920	0.42	-0.6
2,180,404	+		LRK54_RS09920	0.42	+2.7
2,180,404	+		LRK54_RS09920	0.42	+0.2
2,180,404	+		LRK54_RS09920	0.42	+0.3
2,180,404	+		LRK54_RS09920	0.42	-0.1
2,180,404	+		LRK54_RS09920	0.42	-0.6
2,180,405	-		LRK54_RS09920	0.42	-0.5
2,180,405	-		LRK54_RS09920	0.42	-0.5
2,180,405	-		LRK54_RS09920	0.42	+0.4
2,180,405	-		LRK54_RS09920	0.42	-0.0
2,180,405	-		LRK54_RS09920	0.42	-0.5
2,180,405	-		LRK54_RS09920	0.42	+0.7
2,180,405	-		LRK54_RS09920	0.42	-0.1
2,180,405	-		LRK54_RS09920	0.42	+0.1
2,180,405	-		LRK54_RS09920	0.42	+0.1
2,180,405	-		LRK54_RS09920	0.42	+1.0
2,180,405	-		LRK54_RS09920	0.42	+1.2
2,180,405	-		LRK54_RS09920	0.42	+1.3
2,180,405	-		LRK54_RS09920	0.42	+0.5
2,180,405	-		LRK54_RS09920	0.42	-0.4
2,180,405	-		LRK54_RS09920	0.42	-0.1
2,180,405	-		LRK54_RS09920	0.42	-1.3
2,180,425	+		LRK54_RS09920	0.44	-0.0
2,180,426	-		LRK54_RS09920	0.44	+0.2
2,180,562	+		LRK54_RS09920	0.59	-0.3
2,180,562	+		LRK54_RS09920	0.59	-0.3
2,180,562	+		LRK54_RS09920	0.59	+0.9
2,180,590	+		LRK54_RS09920	0.62	-0.4
2,180,590	+		LRK54_RS09920	0.62	-0.3
2,180,590	+		LRK54_RS09920	0.62	-0.3
2,180,590	+		LRK54_RS09920	0.62	+0.2
2,180,590	+		LRK54_RS09920	0.62	+0.0
2,180,591	-		LRK54_RS09920	0.62	-1.2
2,180,591	-		LRK54_RS09920	0.62	+0.3
2,180,591	-		LRK54_RS09920	0.62	+0.3
2,180,591	-		LRK54_RS09920	0.62	+0.6
2,180,591	-		LRK54_RS09920	0.62	+0.0
2,180,591	-		LRK54_RS09920	0.62	+1.9
2,180,591	-		LRK54_RS09920	0.62	-0.0
2,180,794	+		LRK54_RS09920	0.83	-2.1
2,180,794	+		LRK54_RS09920	0.83	-0.9
2,180,794	+		LRK54_RS09920	0.83	+0.3
2,180,794	+		LRK54_RS09920	0.83	-1.5
2,180,795	-		LRK54_RS09920	0.83	-0.2
2,180,795	-		LRK54_RS09920	0.83	+0.9
2,180,795	-		LRK54_RS09920	0.83	+0.3
2,180,795	-		LRK54_RS09920	0.83	-1.1
2,180,795	-		LRK54_RS09920	0.83	+0.2
2,180,915	+				-0.1
2,180,915	+				+0.6
2,180,915	+				-1.6
2,180,916	-				-0.6
2,180,916	-				+0.3
2,180,916	-				-0.8
2,180,916	-				+0.2
2,181,027	+				-0.1
2,181,027	+				+0.7
2,181,027	+				-0.0
2,181,028	-				-0.6
2,181,299	+				-0.1
2,181,299	+				+0.7
2,181,299	+				-0.1
2,181,300	-				-2.1
2,181,300	-				+0.2
2,181,300	-				+0.2
2,181,329	-				-0.5
2,181,329	-				-0.3
2,181,329	-				-0.5
2,181,330	+				+0.7
2,181,330	+				-1.7
2,181,330	+				-2.0
2,181,330	+				-0.6
2,181,330	+				-0.4
2,181,330	+				+0.2
2,181,331	-				+0.3
2,181,331	-				-0.3
2,181,331	-				-2.4
2,181,331	-				-2.0
2,181,331	-				-0.0
2,181,331	-				+1.1
2,181,331	-				-1.3
2,181,331	-				-0.2
2,181,331	-				-0.4
2,181,331	-				+1.3
2,181,331	-				-1.3
2,181,331	-				-1.0
2,181,331	-				+0.4
2,181,331	-				-0.9
2,181,791	+		LRK54_RS09930	0.47	-0.1
2,181,791	+		LRK54_RS09930	0.47	-0.9