Strain Fitness in Pantoea sp. MT58 around IAI47_02160

Experiment: nitrogen source nitrite 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02145 and IAI47_02150 are separated by 12 nucleotidesIAI47_02150 and IAI47_02155 overlap by 1 nucleotidesIAI47_02155 and IAI47_02160 overlap by 1 nucleotidesIAI47_02160 and IAI47_02165 are separated by 388 nucleotides IAI47_02145: IAI47_02145 - 30S ribosomal protein S3, at 457,559 to 458,257 _02145 IAI47_02150: IAI47_02150 - 50S ribosomal protein L16, at 458,270 to 458,680 _02150 IAI47_02155: IAI47_02155 - 50S ribosomal protein L29, at 458,680 to 458,871 _02155 IAI47_02160: IAI47_02160 - 30S ribosomal protein S17, at 458,871 to 459,125 _02160 IAI47_02165: IAI47_02165 - 8-oxoguanine deaminase, at 459,514 to 460,866 _02165 Position (kb) 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 459.184 kb on + strandat 459.215 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.216 kb on + strandat 459.217 kb on - strandat 459.217 kb on - strandat 459.217 kb on - strandat 459.315 kb on + strandat 459.316 kb on - strandat 459.316 kb on - strandat 459.406 kb on + strandat 459.406 kb on + strandat 459.407 kb on - strandat 459.407 kb on - strandat 459.407 kb on - strandat 459.407 kb on - strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.443 kb on + strandat 459.444 kb on - strandat 459.444 kb on - strandat 459.444 kb on - strandat 459.444 kb on - strandat 459.469 kb on + strandat 459.470 kb on - strandat 459.473 kb on - strandat 459.486 kb on + strandat 459.486 kb on + strandat 459.486 kb on + strandat 459.486 kb on + strandat 459.487 kb on - strandat 459.514 kb on - strandat 459.531 kb on - strandat 459.547 kb on + strandat 459.547 kb on + strandat 459.547 kb on + strandat 459.547 kb on + strandat 459.548 kb on - strandat 459.548 kb on - strandat 459.548 kb on - strandat 459.581 kb on + strandat 459.581 kb on + strandat 459.581 kb on + strandat 459.582 kb on - strandat 459.582 kb on - strandat 459.595 kb on - strandat 459.602 kb on + strandat 459.603 kb on - strandat 459.603 kb on - strandat 459.644 kb on + strandat 459.644 kb on + strandat 459.644 kb on + strandat 459.644 kb on + strandat 459.645 kb on - strandat 459.645 kb on - strandat 459.645 kb on - strandat 459.645 kb on - strandat 459.645 kb on - strandat 459.645 kb on - strandat 459.651 kb on + strand, within IAI47_02165at 459.690 kb on + strand, within IAI47_02165at 459.690 kb on + strand, within IAI47_02165at 459.691 kb on - strand, within IAI47_02165at 459.708 kb on + strand, within IAI47_02165at 459.708 kb on + strand, within IAI47_02165at 459.709 kb on - strand, within IAI47_02165at 459.709 kb on - strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.720 kb on + strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.721 kb on - strand, within IAI47_02165at 459.724 kb on + strand, within IAI47_02165at 459.724 kb on + strand, within IAI47_02165at 459.724 kb on + strand, within IAI47_02165at 459.724 kb on + strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.725 kb on - strand, within IAI47_02165at 459.745 kb on - strand, within IAI47_02165at 459.794 kb on - strand, within IAI47_02165at 459.813 kb on - strand, within IAI47_02165at 459.898 kb on + strand, within IAI47_02165at 459.898 kb on + strand, within IAI47_02165at 459.898 kb on + strand, within IAI47_02165at 459.898 kb on + strand, within IAI47_02165at 459.898 kb on + strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.899 kb on - strand, within IAI47_02165at 459.904 kb on + strand, within IAI47_02165at 459.904 kb on + strand, within IAI47_02165at 459.905 kb on - strand, within IAI47_02165at 459.905 kb on - strand, within IAI47_02165at 459.918 kb on + strand, within IAI47_02165at 459.918 kb on + strand, within IAI47_02165at 459.918 kb on + strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.919 kb on - strand, within IAI47_02165at 459.950 kb on + strand, within IAI47_02165at 459.951 kb on - strand, within IAI47_02165at 459.957 kb on + strand, within IAI47_02165at 459.958 kb on - strand, within IAI47_02165at 459.958 kb on - strand, within IAI47_02165at 459.958 kb on - strand, within IAI47_02165at 460.059 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.096 kb on + strand, within IAI47_02165at 460.097 kb on - strand, within IAI47_02165at 460.097 kb on - strand, within IAI47_02165at 460.097 kb on - strand, within IAI47_02165at 460.109 kb on + strand, within IAI47_02165at 460.109 kb on + strand, within IAI47_02165at 460.109 kb on + strand, within IAI47_02165at 460.109 kb on + strand, within IAI47_02165at 460.109 kb on + strand, within IAI47_02165at 460.110 kb on - strand, within IAI47_02165at 460.110 kb on - strand, within IAI47_02165at 460.110 kb on - strand, within IAI47_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
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459,184 + +0.3
459,215 + -0.0
459,216 + +0.2
459,216 + -1.4
459,216 + +0.9
459,216 + +1.1
459,216 + -0.7
459,216 + +0.9
459,216 + -0.9
459,216 + +0.0
459,217 - +0.1
459,217 - -0.6
459,217 - -0.3
459,315 + +0.5
459,316 - -0.3
459,316 - +0.6
459,406 + -2.1
459,406 + -2.8
459,407 - -0.7
459,407 - -1.3
459,407 - -1.1
459,407 - +0.3
459,443 + +0.1
459,443 + -0.3
459,443 + -1.0
459,443 + +1.6
459,443 + -0.9
459,443 + +0.0
459,443 + +0.5
459,444 - +1.6
459,444 - +1.4
459,444 - -0.4
459,444 - -0.0
459,469 + +0.0
459,470 - -1.9
459,473 - +0.8
459,486 + -0.9
459,486 + +0.3
459,486 + -0.4
459,486 + -2.3
459,487 - +0.4
459,514 - +0.8
459,531 - -0.7
459,547 + -0.1
459,547 + -1.9
459,547 + -0.2
459,547 + +0.1
459,548 - +0.7
459,548 - +0.8
459,548 - -0.2
459,581 + +0.7
459,581 + -0.0
459,581 + +0.4
459,582 - -0.8
459,582 - -0.2
459,595 - +1.1
459,602 + +0.8
459,603 - -1.2
459,603 - +0.6
459,644 + -2.5
459,644 + +0.3
459,644 + -0.1
459,644 + -0.4
459,645 - +0.2
459,645 - -0.5
459,645 - +1.5
459,645 - +1.3
459,645 - +0.3
459,645 - +0.8
459,651 + IAI47_02165 0.10 -0.4
459,690 + IAI47_02165 0.13 -0.2
459,690 + IAI47_02165 0.13 -0.3
459,691 - IAI47_02165 0.13 +0.9
459,708 + IAI47_02165 0.14 +1.0
459,708 + IAI47_02165 0.14 -0.7
459,709 - IAI47_02165 0.14 -2.5
459,709 - IAI47_02165 0.14 +1.4
459,720 + IAI47_02165 0.15 +0.1
459,720 + IAI47_02165 0.15 +1.2
459,720 + IAI47_02165 0.15 +0.1
459,720 + IAI47_02165 0.15 +0.4
459,720 + IAI47_02165 0.15 +0.8
459,720 + IAI47_02165 0.15 +0.8
459,720 + IAI47_02165 0.15 +0.9
459,720 + IAI47_02165 0.15 -0.2
459,720 + IAI47_02165 0.15 +0.4
459,720 + IAI47_02165 0.15 +0.5
459,720 + IAI47_02165 0.15 +0.1
459,720 + IAI47_02165 0.15 +0.5
459,721 - IAI47_02165 0.15 +0.3
459,721 - IAI47_02165 0.15 +0.4
459,721 - IAI47_02165 0.15 +1.0
459,721 - IAI47_02165 0.15 +0.8
459,721 - IAI47_02165 0.15 -0.3
459,721 - IAI47_02165 0.15 +0.8
459,721 - IAI47_02165 0.15 -0.1
459,721 - IAI47_02165 0.15 +2.0
459,721 - IAI47_02165 0.15 +1.2
459,721 - IAI47_02165 0.15 +0.2
459,721 - IAI47_02165 0.15 +0.3
459,724 + IAI47_02165 0.16 +0.6
459,724 + IAI47_02165 0.16 -0.4
459,724 + IAI47_02165 0.16 -0.4
459,724 + IAI47_02165 0.16 +0.4
459,725 - IAI47_02165 0.16 -2.1
459,725 - IAI47_02165 0.16 -0.1
459,725 - IAI47_02165 0.16 +1.4
459,725 - IAI47_02165 0.16 -2.0
459,725 - IAI47_02165 0.16 -1.2
459,725 - IAI47_02165 0.16 -0.7
459,725 - IAI47_02165 0.16 +1.1
459,725 - IAI47_02165 0.16 +0.1
459,725 - IAI47_02165 0.16 -0.4
459,745 - IAI47_02165 0.17 +0.0
459,794 - IAI47_02165 0.21 +0.1
459,813 - IAI47_02165 0.22 -0.1
459,898 + IAI47_02165 0.28 +0.6
459,898 + IAI47_02165 0.28 +0.9
459,898 + IAI47_02165 0.28 -0.4
459,898 + IAI47_02165 0.28 -0.3
459,898 + IAI47_02165 0.28 -0.3
459,899 - IAI47_02165 0.28 +1.0
459,899 - IAI47_02165 0.28 +1.3
459,899 - IAI47_02165 0.28 -1.6
459,899 - IAI47_02165 0.28 -1.2
459,899 - IAI47_02165 0.28 +1.0
459,899 - IAI47_02165 0.28 -1.1
459,899 - IAI47_02165 0.28 +0.8
459,899 - IAI47_02165 0.28 -1.2
459,904 + IAI47_02165 0.29 +0.4
459,904 + IAI47_02165 0.29 +2.1
459,905 - IAI47_02165 0.29 +0.2
459,905 - IAI47_02165 0.29 -1.9
459,918 + IAI47_02165 0.30 +0.6
459,918 + IAI47_02165 0.30 +0.9
459,918 + IAI47_02165 0.30 +2.1
459,919 - IAI47_02165 0.30 +0.6
459,919 - IAI47_02165 0.30 +0.9
459,919 - IAI47_02165 0.30 -0.3
459,919 - IAI47_02165 0.30 -0.1
459,919 - IAI47_02165 0.30 -0.1
459,919 - IAI47_02165 0.30 +1.1
459,919 - IAI47_02165 0.30 +0.3
459,919 - IAI47_02165 0.30 +0.4
459,919 - IAI47_02165 0.30 +1.1
459,919 - IAI47_02165 0.30 +0.1
459,950 + IAI47_02165 0.32 +0.2
459,951 - IAI47_02165 0.32 +0.1
459,957 + IAI47_02165 0.33 +1.1
459,958 - IAI47_02165 0.33 +1.3
459,958 - IAI47_02165 0.33 +1.0
459,958 - IAI47_02165 0.33 +1.0
460,059 + IAI47_02165 0.40 -0.7
460,096 + IAI47_02165 0.43 -1.2
460,096 + IAI47_02165 0.43 +1.4
460,096 + IAI47_02165 0.43 +0.0
460,096 + IAI47_02165 0.43 +0.2
460,096 + IAI47_02165 0.43 -0.3
460,096 + IAI47_02165 0.43 -1.2
460,096 + IAI47_02165 0.43 +1.1
460,097 - IAI47_02165 0.43 +0.4
460,097 - IAI47_02165 0.43 +1.2
460,097 - IAI47_02165 0.43 +0.6
460,109 + IAI47_02165 0.44 -0.4
460,109 + IAI47_02165 0.44 +0.8
460,109 + IAI47_02165 0.44 +0.5
460,109 + IAI47_02165 0.44 -0.6
460,109 + IAI47_02165 0.44 +0.8
460,110 - IAI47_02165 0.44 +0.8
460,110 - IAI47_02165 0.44 +0.8
460,110 - IAI47_02165 0.44 +0.3

Or see this region's nucleotide sequence