Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2431

Experiment: 5-Hydroxymethylfurfural 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 1 mM
2,520,905	-		Ga0059261_2429	0.49	+0.3
2,521,031	+		Ga0059261_2429	0.74	+0.1
2,521,031	+		Ga0059261_2429	0.74	-1.2
2,521,031	+		Ga0059261_2429	0.74	+0.3
2,521,031	+		Ga0059261_2429	0.74	-0.7
2,521,031	+		Ga0059261_2429	0.74	-1.8
2,521,031	+		Ga0059261_2429	0.74	+0.5
2,521,031	+		Ga0059261_2429	0.74	-0.2
2,521,032	-		Ga0059261_2429	0.74	+0.8
2,521,032	-		Ga0059261_2429	0.74	-0.4
2,521,032	-		Ga0059261_2429	0.74	+0.2
2,521,032	-		Ga0059261_2429	0.74	+0.3
2,521,161	-				+0.3
2,521,195	+				-0.5
2,521,195	+				+0.3
2,521,195	+				+2.3
2,521,195	+				+0.8
2,521,195	+				+0.6
2,521,195	+				-2.1
2,521,196	-				+0.1
2,521,196	-				+0.0
2,521,196	-				-1.0
2,521,196	-				+0.1
2,521,196	-				+2.8
2,521,196	-				-0.4
2,521,196	-				-0.2
2,521,196	-				-0.0
2,521,197	-				+0.2
2,521,206	+				-0.7
2,521,834	+		Ga0059261_2431	0.28	-0.7
2,521,834	+		Ga0059261_2431	0.28	+0.1
2,521,834	+		Ga0059261_2431	0.28	+0.7
2,521,834	+		Ga0059261_2431	0.28	+0.8
2,521,834	+		Ga0059261_2431	0.28	+0.6
2,521,834	+		Ga0059261_2431	0.28	+0.9
2,521,834	+		Ga0059261_2431	0.28	+0.5
2,521,835	-		Ga0059261_2431	0.28	-0.6
2,521,835	-		Ga0059261_2431	0.28	-1.2
2,521,835	-		Ga0059261_2431	0.28	-0.7
2,521,835	-		Ga0059261_2431	0.28	+0.8
2,521,835	-		Ga0059261_2431	0.28	+0.8
2,521,835	-		Ga0059261_2431	0.28	+0.2
2,521,835	-		Ga0059261_2431	0.28	-0.4
2,521,835	-		Ga0059261_2431	0.28	+0.4
2,521,835	-		Ga0059261_2431	0.28	-0.3
2,521,835	-		Ga0059261_2431	0.28	-1.1
2,521,835	-		Ga0059261_2431	0.28	-1.8
2,521,835	-		Ga0059261_2431	0.28	-0.3
2,521,942	+		Ga0059261_2431	0.53	+0.2
2,521,943	-		Ga0059261_2431	0.53	-0.3
2,522,023	+		Ga0059261_2431	0.72	-2.2
2,522,023	+		Ga0059261_2431	0.72	-0.6
2,522,024	-		Ga0059261_2431	0.72	-0.5
2,522,024	-		Ga0059261_2431	0.72	+0.3
2,522,024	-		Ga0059261_2431	0.72	-0.6
2,522,035	+		Ga0059261_2431	0.74	-0.0
2,522,035	+		Ga0059261_2431	0.74	-0.1
2,522,035	+		Ga0059261_2431	0.74	-0.2
2,522,035	+		Ga0059261_2431	0.74	-0.6
2,522,035	+		Ga0059261_2431	0.74	-0.8
2,522,035	+		Ga0059261_2431	0.74	+0.3
2,522,035	+		Ga0059261_2431	0.74	-2.1
2,522,035	+		Ga0059261_2431	0.74	+0.2
2,522,035	+		Ga0059261_2431	0.74	+0.2
2,522,035	+		Ga0059261_2431	0.74	-0.1
2,522,035	+		Ga0059261_2431	0.74	-0.4
2,522,035	+		Ga0059261_2431	0.74	-2.6
2,522,035	+		Ga0059261_2431	0.74	-0.2
2,522,036	-		Ga0059261_2431	0.75	-0.5
2,522,036	-		Ga0059261_2431	0.75	-0.1
2,522,036	-		Ga0059261_2431	0.75	-0.1
2,522,124	-				+0.1
2,522,256	+				-0.1
2,522,257	-				+0.1
2,522,315	+				+0.0
2,522,315	+				-0.1
2,522,315	+				-1.0
2,522,315	+				+0.3
2,522,315	+				+0.4
2,522,316	-				+0.0
2,522,316	-				+0.2
2,522,316	-				-0.3
2,522,316	-				-0.4
2,522,316	-				+0.1
2,522,316	-				-0.9
2,522,316	-				+0.3
2,522,339	+				-1.1
2,522,340	-				-0.0
2,522,340	-				+0.4
2,522,340	-				-0.2
2,522,342	+				+0.1
2,522,342	+				-0.3
2,522,342	+				+1.9
2,522,342	+				+0.1
2,522,342	+				+0.1
2,522,342	+				+0.5
2,522,342	+				-0.2
2,522,342	+				-0.6
2,522,342	+				-0.1
2,522,342	+				+0.3
2,522,342	+				+0.7
2,522,342	+				+1.1
2,522,342	+				-0.0
2,522,342	+				-0.4
2,522,342	+				-0.5
2,522,342	+				+0.5
2,522,342	+				-0.1
2,522,343	-				+0.5
2,522,343	-				+0.1
2,522,343	-				-0.3
2,522,343	-				+0.1
2,522,343	-				-0.0
2,522,343	-				-1.3
2,522,343	-				+0.5
2,522,343	-				+0.0
2,522,343	-				-0.6
2,522,343	-				+1.0
2,522,343	-				+0.1
2,522,343	-				+0.5
2,522,343	-				-0.6
2,522,405	+		Ga0059261_2432	0.23	+0.4
2,522,405	+		Ga0059261_2432	0.23	+0.3
2,522,405	+		Ga0059261_2432	0.23	+0.2
2,522,405	+		Ga0059261_2432	0.23	-0.1
2,522,405	+		Ga0059261_2432	0.23	+0.7
2,522,406	-		Ga0059261_2432	0.24	-0.7
2,522,406	-		Ga0059261_2432	0.24	+0.0
2,522,406	-		Ga0059261_2432	0.24	+0.4
2,522,435	+		Ga0059261_2432	0.31	+0.2
2,522,435	+		Ga0059261_2432	0.31	-1.8
2,522,435	+		Ga0059261_2432	0.31	+0.2
2,522,435	+		Ga0059261_2432	0.31	-0.4
2,522,435	+		Ga0059261_2432	0.31	+0.3
2,522,435	+		Ga0059261_2432	0.31	-1.5
2,522,436	-		Ga0059261_2432	0.31	+0.2
2,522,436	-		Ga0059261_2432	0.31	-0.1
2,522,436	-		Ga0059261_2432	0.31	+0.3
2,522,436	-		Ga0059261_2432	0.31	-1.1
2,522,436	-		Ga0059261_2432	0.31	+0.7
2,522,436	-		Ga0059261_2432	0.31	+0.9
2,522,436	-		Ga0059261_2432	0.31	+0.3
2,522,507	+		Ga0059261_2432	0.48	-0.7
2,522,507	+		Ga0059261_2432	0.48	+0.1
2,522,507	+		Ga0059261_2432	0.48	-0.7
2,522,507	+		Ga0059261_2432	0.48	-0.1
2,522,507	+		Ga0059261_2432	0.48	+1.0
2,522,507	+		Ga0059261_2432	0.48	-0.3
2,522,507	+		Ga0059261_2432	0.48	+0.6
2,522,507	+		Ga0059261_2432	0.48	+0.2
2,522,508	-		Ga0059261_2432	0.48	+0.1
2,522,508	-		Ga0059261_2432	0.48	-0.1
2,522,508	-		Ga0059261_2432	0.48	+0.3
2,522,508	-		Ga0059261_2432	0.48	+0.7
2,522,508	-		Ga0059261_2432	0.48	+0.4
2,522,508	-		Ga0059261_2432	0.48	-0.3
2,522,508	-		Ga0059261_2432	0.48	-0.1
2,522,508	-		Ga0059261_2432	0.48	+0.6
2,522,508	-		Ga0059261_2432	0.48	-0.1
2,522,589	-		Ga0059261_2432	0.68	+0.5
2,522,626	+		Ga0059261_2432	0.77	+0.3
2,522,626	+		Ga0059261_2432	0.77	-0.4
2,522,626	+		Ga0059261_2432	0.77	-0.3
2,522,627	-		Ga0059261_2432	0.77	-2.7
2,522,717	+				-1.6
2,522,717	+				+0.0
2,522,717	+				+0.0
2,522,717	+				+0.9
2,522,717	+				+1.0
2,522,717	+				-0.1
2,522,717	+				+0.1
2,522,717	+				-0.3
2,522,718	-				-0.8
2,522,721	+				+0.1
2,522,721	+				+0.5
2,522,721	+				-0.1
2,522,722	-				+2.0
2,522,722	-				+0.2
2,522,802	+				+0.0
2,522,803	-				-0.0
2,522,803	-				+0.9
2,522,803	-				-0.4
2,522,803	-				-0.2
2,522,953	-		Ga0059261_2433	0.12	-0.0
2,522,960	-		Ga0059261_2433	0.12	-0.8
2,522,960	-		Ga0059261_2433	0.12	+1.6
2,522,986	+		Ga0059261_2433	0.15	-0.3
2,522,986	+		Ga0059261_2433	0.15	-1.1
2,522,986	+		Ga0059261_2433	0.15	-0.4
2,522,986	+		Ga0059261_2433	0.15	-0.6
2,522,987	-		Ga0059261_2433	0.15	+0.2
2,522,997	+		Ga0059261_2433	0.16	+0.5
2,523,106	+				+0.7
2,523,106	+		Ga0059261_2433	0.25	-0.9
2,523,107	-		Ga0059261_2433	0.25	-0.6