Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0398

Experiment: 5-Hydroxymethylfurfural 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0397 and Ga0059261_0398 overlap by 13 nucleotidesGa0059261_0398 and Ga0059261_0399 overlap by 8 nucleotidesGa0059261_0399 and Ga0059261_0400 are separated by 199 nucleotides Ga0059261_0397: Ga0059261_0397 - Transglycosylase SLT domain, at 383,042 to 383,635 _0397 Ga0059261_0398: Ga0059261_0398 - Type IV secretory pathway, protease TraF, at 383,623 to 384,183 _0398 Ga0059261_0399: Ga0059261_0399 - Helix-turn-helix domain, at 384,176 to 384,415 _0399 Ga0059261_0400: Ga0059261_0400 - hypothetical protein, at 384,615 to 384,809 _0400 Position (kb) 383 384 385Strain fitness (log2 ratio) -1 0 1 2at 383.043 kb on + strandat 383.044 kb on - strandat 383.061 kb on - strandat 383.061 kb on - strandat 383.193 kb on + strand, within Ga0059261_0397at 383.193 kb on + strand, within Ga0059261_0397at 383.193 kb on + strand, within Ga0059261_0397at 383.194 kb on - strand, within Ga0059261_0397at 383.194 kb on - strand, within Ga0059261_0397at 383.194 kb on - strand, within Ga0059261_0397at 383.244 kb on + strand, within Ga0059261_0397at 383.245 kb on - strand, within Ga0059261_0397at 383.264 kb on - strand, within Ga0059261_0397at 383.301 kb on + strand, within Ga0059261_0397at 383.301 kb on + strand, within Ga0059261_0397at 383.301 kb on + strandat 383.301 kb on + strand, within Ga0059261_0397at 383.301 kb on + strand, within Ga0059261_0397at 383.302 kb on - strand, within Ga0059261_0397at 383.302 kb on - strand, within Ga0059261_0397at 383.302 kb on - strand, within Ga0059261_0397at 383.302 kb on - strand, within Ga0059261_0397at 383.302 kb on - strand, within Ga0059261_0397at 383.316 kb on + strand, within Ga0059261_0397at 383.316 kb on + strand, within Ga0059261_0397at 383.316 kb on + strand, within Ga0059261_0397at 383.317 kb on - strand, within Ga0059261_0397at 383.335 kb on + strand, within Ga0059261_0397at 383.336 kb on - strand, within Ga0059261_0397at 383.425 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.545 kb on + strand, within Ga0059261_0397at 383.546 kb on - strand, within Ga0059261_0397at 383.546 kb on - strand, within Ga0059261_0397at 383.546 kb on - strand, within Ga0059261_0397at 383.546 kb on - strand, within Ga0059261_0397at 383.547 kb on + strand, within Ga0059261_0397at 383.547 kb on + strand, within Ga0059261_0397at 383.547 kb on + strand, within Ga0059261_0397at 383.547 kb on + strand, within Ga0059261_0397at 383.547 kb on + strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.548 kb on - strand, within Ga0059261_0397at 383.636 kb on - strandat 383.684 kb on + strand, within Ga0059261_0398at 383.685 kb on - strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.748 kb on + strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.749 kb on - strand, within Ga0059261_0398at 383.890 kb on + strandat 383.890 kb on + strand, within Ga0059261_0398at 383.906 kb on + strand, within Ga0059261_0398at 383.906 kb on + strand, within Ga0059261_0398at 383.907 kb on - strand, within Ga0059261_0398at 383.907 kb on - strand, within Ga0059261_0398at 383.907 kb on - strand, within Ga0059261_0398at 383.907 kb on - strand, within Ga0059261_0398at 383.961 kb on + strandat 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strand, within Ga0059261_0398at 383.961 kb on + strandat 383.962 kb on - strand, within Ga0059261_0398at 383.962 kb on - strand, within Ga0059261_0398at 383.962 kb on - strand, within Ga0059261_0398at 383.962 kb on - strand, within Ga0059261_0398at 383.982 kb on + strand, within Ga0059261_0398at 384.232 kb on + strand, within Ga0059261_0399at 384.233 kb on - strand, within Ga0059261_0399at 384.233 kb on - strand, within Ga0059261_0399at 384.237 kb on + strand, within Ga0059261_0399at 384.237 kb on + strand, within Ga0059261_0399at 384.238 kb on - strand, within Ga0059261_0399at 384.286 kb on + strand, within Ga0059261_0399at 384.286 kb on + strand, within Ga0059261_0399at 384.286 kb on + strand, within Ga0059261_0399at 384.287 kb on - strand, within Ga0059261_0399at 384.287 kb on - strand, within Ga0059261_0399at 384.287 kb on - strand, within Ga0059261_0399at 384.291 kb on + strand, within Ga0059261_0399at 384.292 kb on - strand, within Ga0059261_0399at 384.292 kb on - strand, within Ga0059261_0399at 384.292 kb on - strand, within Ga0059261_0399at 384.314 kb on + strand, within Ga0059261_0399at 384.314 kb on + strand, within Ga0059261_0399at 384.315 kb on - strand, within Ga0059261_0399at 384.315 kb on - strand, within Ga0059261_0399at 384.315 kb on - strand, within Ga0059261_0399at 384.324 kb on + strand, within Ga0059261_0399at 384.324 kb on + strandat 384.325 kb on - strand, within Ga0059261_0399at 384.325 kb on - strand, within Ga0059261_0399at 384.397 kb on + strandat 384.509 kb on + strandat 384.510 kb on - strandat 384.550 kb on + strandat 384.554 kb on + strandat 384.555 kb on - strandat 384.561 kb on + strandat 384.657 kb on + strand, within Ga0059261_0400at 384.657 kb on + strand, within Ga0059261_0400at 384.658 kb on - strand, within Ga0059261_0400at 384.658 kb on - strand, within Ga0059261_0400at 384.658 kb on - strand, within Ga0059261_0400at 384.658 kb on - strand, within Ga0059261_0400at 384.658 kb on - strand, within Ga0059261_0400at 384.669 kb on + strand, within Ga0059261_0400at 384.717 kb on + strand, within Ga0059261_0400at 384.732 kb on + strand, within Ga0059261_0400at 384.799 kb on + strandat 384.799 kb on + strandat 384.799 kb on + strandat 384.799 kb on + strandat 384.799 kb on + strandat 384.799 kb on + strandat 384.800 kb on - strandat 384.800 kb on - strandat 384.800 kb on - strandat 384.915 kb on + strandat 384.915 kb on + strandat 384.915 kb on + strandat 384.915 kb on + strandat 384.916 kb on - strandat 384.916 kb on - strandat 384.916 kb on - strandat 384.916 kb on - strandat 384.916 kb on - strandat 384.916 kb on - strandat 384.936 kb on + strandat 384.936 kb on + strandat 384.936 kb on + strandat 384.936 kb on + strandat 384.937 kb on - strandat 384.937 kb on - strandat 384.937 kb on - strandat 384.937 kb on - strandat 384.937 kb on - strandat 384.937 kb on - strandat 384.949 kb on - strandat 385.003 kb on + strandat 385.004 kb on - strandat 385.004 kb on - strandat 385.008 kb on + strandat 385.009 kb on - strandat 385.031 kb on + strandat 385.031 kb on + strandat 385.078 kb on + strandat 385.078 kb on + strandat 385.079 kb on - strandat 385.079 kb on - strandat 385.079 kb on - strandat 385.079 kb on - strandat 385.116 kb on + strandat 385.116 kb on + strandat 385.116 kb on + strandat 385.116 kb on + strandat 385.116 kb on + strandat 385.117 kb on - strandat 385.117 kb on - strandat 385.117 kb on - strandat 385.117 kb on - strandat 385.117 kb on - strandat 385.122 kb on + strandat 385.122 kb on + strandat 385.122 kb on + strandat 385.122 kb on + strandat 385.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 1 mM
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383,043 + +0.3
383,044 - -0.3
383,061 - +1.1
383,061 - -0.9
383,193 + Ga0059261_0397 0.25 +1.2
383,193 + Ga0059261_0397 0.25 -0.3
383,193 + Ga0059261_0397 0.25 -1.4
383,194 - Ga0059261_0397 0.26 +1.1
383,194 - Ga0059261_0397 0.26 +0.3
383,194 - Ga0059261_0397 0.26 +0.1
383,244 + Ga0059261_0397 0.34 +0.1
383,245 - Ga0059261_0397 0.34 +0.1
383,264 - Ga0059261_0397 0.37 +0.0
383,301 + Ga0059261_0397 0.44 -0.2
383,301 + Ga0059261_0397 0.44 +0.4
383,301 + -1.4
383,301 + Ga0059261_0397 0.44 +0.1
383,301 + Ga0059261_0397 0.44 -0.0
383,302 - Ga0059261_0397 0.44 -0.3
383,302 - Ga0059261_0397 0.44 -0.7
383,302 - Ga0059261_0397 0.44 +0.3
383,302 - Ga0059261_0397 0.44 +0.1
383,302 - Ga0059261_0397 0.44 -0.2
383,316 + Ga0059261_0397 0.46 +0.6
383,316 + Ga0059261_0397 0.46 -0.5
383,316 + Ga0059261_0397 0.46 -0.2
383,317 - Ga0059261_0397 0.46 -0.2
383,335 + Ga0059261_0397 0.49 +0.0
383,336 - Ga0059261_0397 0.49 +0.0
383,425 + Ga0059261_0397 0.64 -0.3
383,545 + Ga0059261_0397 0.85 -0.7
383,545 + Ga0059261_0397 0.85 +1.2
383,545 + Ga0059261_0397 0.85 -0.6
383,545 + Ga0059261_0397 0.85 -0.9
383,545 + Ga0059261_0397 0.85 +0.6
383,545 + Ga0059261_0397 0.85 +1.2
383,545 + Ga0059261_0397 0.85 -0.1
383,545 + Ga0059261_0397 0.85 +0.2
383,545 + Ga0059261_0397 0.85 -0.0
383,546 - Ga0059261_0397 0.85 -0.0
383,546 - Ga0059261_0397 0.85 +0.3
383,546 - Ga0059261_0397 0.85 +0.7
383,546 - Ga0059261_0397 0.85 -0.4
383,547 + Ga0059261_0397 0.85 +0.1
383,547 + Ga0059261_0397 0.85 +0.4
383,547 + Ga0059261_0397 0.85 -0.6
383,547 + Ga0059261_0397 0.85 +1.3
383,547 + Ga0059261_0397 0.85 -0.7
383,548 - Ga0059261_0397 0.85 -0.2
383,548 - Ga0059261_0397 0.85 -0.1
383,548 - Ga0059261_0397 0.85 +0.6
383,548 - Ga0059261_0397 0.85 +0.1
383,548 - Ga0059261_0397 0.85 +0.1
383,548 - Ga0059261_0397 0.85 +0.1
383,548 - Ga0059261_0397 0.85 -1.0
383,636 - -0.5
383,684 + Ga0059261_0398 0.11 -0.3
383,685 - Ga0059261_0398 0.11 -0.3
383,748 + Ga0059261_0398 0.22 -0.5
383,748 + Ga0059261_0398 0.22 +0.6
383,748 + Ga0059261_0398 0.22 -0.2
383,748 + Ga0059261_0398 0.22 +0.5
383,748 + Ga0059261_0398 0.22 +0.2
383,748 + Ga0059261_0398 0.22 -0.1
383,749 - Ga0059261_0398 0.22 +0.8
383,749 - Ga0059261_0398 0.22 -0.5
383,749 - Ga0059261_0398 0.22 +1.6
383,749 - Ga0059261_0398 0.22 -0.4
383,749 - Ga0059261_0398 0.22 +1.4
383,749 - Ga0059261_0398 0.22 +1.3
383,749 - Ga0059261_0398 0.22 +0.5
383,749 - Ga0059261_0398 0.22 -0.2
383,749 - Ga0059261_0398 0.22 +0.2
383,749 - Ga0059261_0398 0.22 -0.8
383,890 + -1.0
383,890 + Ga0059261_0398 0.48 +0.5
383,906 + Ga0059261_0398 0.50 +0.0
383,906 + Ga0059261_0398 0.50 +0.4
383,907 - Ga0059261_0398 0.51 +0.3
383,907 - Ga0059261_0398 0.51 +0.3
383,907 - Ga0059261_0398 0.51 +0.1
383,907 - Ga0059261_0398 0.51 -1.1
383,961 + -0.4
383,961 + Ga0059261_0398 0.60 +0.2
383,961 + Ga0059261_0398 0.60 +0.0
383,961 + Ga0059261_0398 0.60 -0.8
383,961 + Ga0059261_0398 0.60 +0.5
383,961 + Ga0059261_0398 0.60 +0.3
383,961 + Ga0059261_0398 0.60 -0.9
383,961 + +2.2
383,962 - Ga0059261_0398 0.60 -0.3
383,962 - Ga0059261_0398 0.60 +1.0
383,962 - Ga0059261_0398 0.60 +1.6
383,962 - Ga0059261_0398 0.60 +0.1
383,982 + Ga0059261_0398 0.64 +0.9
384,232 + Ga0059261_0399 0.23 -0.2
384,233 - Ga0059261_0399 0.24 -0.5
384,233 - Ga0059261_0399 0.24 +0.1
384,237 + Ga0059261_0399 0.25 -0.5
384,237 + Ga0059261_0399 0.25 +0.6
384,238 - Ga0059261_0399 0.26 +0.6
384,286 + Ga0059261_0399 0.46 -0.1
384,286 + Ga0059261_0399 0.46 -0.3
384,286 + Ga0059261_0399 0.46 -0.2
384,287 - Ga0059261_0399 0.46 -0.2
384,287 - Ga0059261_0399 0.46 +0.0
384,287 - Ga0059261_0399 0.46 +0.1
384,291 + Ga0059261_0399 0.48 -0.8
384,292 - Ga0059261_0399 0.48 -1.2
384,292 - Ga0059261_0399 0.48 +0.9
384,292 - Ga0059261_0399 0.48 +0.6
384,314 + Ga0059261_0399 0.57 +0.5
384,314 + Ga0059261_0399 0.57 +0.9
384,315 - Ga0059261_0399 0.58 -0.2
384,315 - Ga0059261_0399 0.58 +0.9
384,315 - Ga0059261_0399 0.58 +0.2
384,324 + Ga0059261_0399 0.62 +0.9
384,324 + +0.6
384,325 - Ga0059261_0399 0.62 +1.6
384,325 - Ga0059261_0399 0.62 +0.4
384,397 + -0.1
384,509 + +0.3
384,510 - -0.3
384,550 + -1.0
384,554 + +1.0
384,555 - -1.0
384,561 + +1.9
384,657 + Ga0059261_0400 0.22 +0.5
384,657 + Ga0059261_0400 0.22 -0.6
384,658 - Ga0059261_0400 0.22 -0.7
384,658 - Ga0059261_0400 0.22 +0.2
384,658 - Ga0059261_0400 0.22 -0.6
384,658 - Ga0059261_0400 0.22 +0.2
384,658 - Ga0059261_0400 0.22 -0.0
384,669 + Ga0059261_0400 0.28 +0.5
384,717 + Ga0059261_0400 0.52 -0.2
384,732 + Ga0059261_0400 0.60 +0.8
384,799 + +0.5
384,799 + +0.2
384,799 + -0.6
384,799 + +0.4
384,799 + -0.8
384,799 + +0.1
384,800 - +0.1
384,800 - +1.0
384,800 - -0.3
384,915 + +0.9
384,915 + +0.8
384,915 + -0.4
384,915 + +0.5
384,916 - -0.7
384,916 - +0.1
384,916 - -0.2
384,916 - +0.4
384,916 - -0.7
384,916 - -0.3
384,936 + +0.4
384,936 + +0.1
384,936 + -0.7
384,936 + +0.3
384,937 - -0.2
384,937 - -1.4
384,937 - +0.3
384,937 - +0.3
384,937 - -0.4
384,937 - +0.2
384,949 - +0.6
385,003 + -0.3
385,004 - -0.2
385,004 - +0.6
385,008 + -0.6
385,009 - -0.8
385,031 + +0.1
385,031 + -0.6
385,078 + +0.0
385,078 + +0.3
385,079 - +0.4
385,079 - -0.1
385,079 - -1.2
385,079 - -0.0
385,116 + +0.2
385,116 + -1.4
385,116 + -0.6
385,116 + +0.6
385,116 + +0.6
385,117 - -1.0
385,117 - +0.2
385,117 - +0.3
385,117 - -1.7
385,117 - +0.8
385,122 + -0.1
385,122 + +1.2
385,122 + -0.5
385,122 + -0.3
385,123 - +0.9

Or see this region's nucleotide sequence