Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0383

Experiment: 5-Hydroxymethylfurfural 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0381 and Ga0059261_0382 overlap by 4 nucleotidesGa0059261_0382 and Ga0059261_0383 are separated by 12 nucleotidesGa0059261_0383 and Ga0059261_0384 are separated by 3 nucleotides Ga0059261_0381: Ga0059261_0381 - Type IV secretory pathway, VirB10 components, at 365,875 to 367,107 _0381 Ga0059261_0382: Ga0059261_0382 - P-type conjugative transfer protein TrbG, at 367,104 to 367,955 _0382 Ga0059261_0383: Ga0059261_0383 - Type IV secretory pathway, TrbF components, at 367,968 to 368,792 _0383 Ga0059261_0384: Ga0059261_0384 - P-type conjugative transfer protein TrbL, at 368,796 to 370,088 _0384 Position (kb) 367 368 369Strain fitness (log2 ratio) -1 0 1 2 3at 366.972 kb on + strand, within Ga0059261_0381at 367.146 kb on + strandat 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.225 kb on + strand, within Ga0059261_0382at 367.226 kb on - strand, within Ga0059261_0382at 367.226 kb on - strand, within Ga0059261_0382at 367.226 kb on - strand, within Ga0059261_0382at 367.226 kb on - strand, within Ga0059261_0382at 367.226 kb on - strand, within Ga0059261_0382at 367.226 kb on - strandat 367.228 kb on + strand, within Ga0059261_0382at 367.228 kb on + strand, within Ga0059261_0382at 367.228 kb on + strand, within Ga0059261_0382at 367.228 kb on + strand, within Ga0059261_0382at 367.229 kb on - strand, within Ga0059261_0382at 367.229 kb on - strand, within Ga0059261_0382at 367.229 kb on - strand, within Ga0059261_0382at 367.229 kb on - strand, within Ga0059261_0382at 367.229 kb on - strand, within Ga0059261_0382at 367.246 kb on + strand, within Ga0059261_0382at 367.246 kb on + strandat 367.246 kb on + strand, within Ga0059261_0382at 367.247 kb on - strand, within Ga0059261_0382at 367.247 kb on - strand, within Ga0059261_0382at 367.247 kb on - strand, within Ga0059261_0382at 367.280 kb on + strandat 367.280 kb on + strand, within Ga0059261_0382at 367.280 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.333 kb on + strand, within Ga0059261_0382at 367.334 kb on - strand, within Ga0059261_0382at 367.334 kb on - strand, within Ga0059261_0382at 367.334 kb on - strand, within Ga0059261_0382at 367.334 kb on - strand, within Ga0059261_0382at 367.397 kb on + strand, within Ga0059261_0382at 367.397 kb on + strand, within Ga0059261_0382at 367.398 kb on - strand, within Ga0059261_0382at 367.398 kb on - strand, within Ga0059261_0382at 367.398 kb on - strand, within Ga0059261_0382at 367.502 kb on - strand, within Ga0059261_0382at 367.558 kb on + strand, within Ga0059261_0382at 367.558 kb on + strand, within Ga0059261_0382at 367.558 kb on + strand, within Ga0059261_0382at 367.558 kb on + strand, within Ga0059261_0382at 367.558 kb on + strand, within Ga0059261_0382at 367.559 kb on - strand, within Ga0059261_0382at 367.559 kb on - strand, within Ga0059261_0382at 367.559 kb on - strand, within Ga0059261_0382at 367.559 kb on - strand, within Ga0059261_0382at 367.559 kb on - strandat 367.584 kb on + strand, within Ga0059261_0382at 367.584 kb on + strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.585 kb on - strand, within Ga0059261_0382at 367.616 kb on + strand, within Ga0059261_0382at 367.626 kb on - strand, within Ga0059261_0382at 367.626 kb on - strand, within Ga0059261_0382at 367.662 kb on - strand, within Ga0059261_0382at 367.759 kb on + strand, within Ga0059261_0382at 367.759 kb on + strand, within Ga0059261_0382at 367.759 kb on + strand, within Ga0059261_0382at 367.759 kb on + strand, within Ga0059261_0382at 367.759 kb on + strand, within Ga0059261_0382at 367.760 kb on - strand, within Ga0059261_0382at 367.760 kb on - strand, within Ga0059261_0382at 367.760 kb on - strand, within Ga0059261_0382at 367.786 kb on + strand, within Ga0059261_0382at 367.786 kb on + strand, within Ga0059261_0382at 367.787 kb on - strand, within Ga0059261_0382at 367.792 kb on + strand, within Ga0059261_0382at 367.792 kb on + strand, within Ga0059261_0382at 367.792 kb on + strand, within Ga0059261_0382at 367.793 kb on - strand, within Ga0059261_0382at 367.793 kb on - strand, within Ga0059261_0382at 367.793 kb on - strand, within Ga0059261_0382at 367.793 kb on - strand, within Ga0059261_0382at 367.793 kb on - strand, within Ga0059261_0382at 367.813 kb on + strand, within Ga0059261_0382at 367.813 kb on + strand, within Ga0059261_0382at 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.045 kb on + strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.046 kb on - strandat 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.146 kb on + strand, within Ga0059261_0383at 368.147 kb on - strand, within Ga0059261_0383at 368.147 kb on - strand, within Ga0059261_0383at 368.147 kb on - strand, within Ga0059261_0383at 368.147 kb on - strandat 368.254 kb on + strand, within Ga0059261_0383at 368.254 kb on + strand, within Ga0059261_0383at 368.254 kb on + strandat 368.254 kb on + strand, within Ga0059261_0383at 368.255 kb on - strand, within Ga0059261_0383at 368.371 kb on + strand, within Ga0059261_0383at 368.371 kb on + strand, within Ga0059261_0383at 368.414 kb on - strand, within Ga0059261_0383at 368.521 kb on + strand, within Ga0059261_0383at 368.521 kb on + strand, within Ga0059261_0383at 368.521 kb on + strand, within Ga0059261_0383at 368.521 kb on + strand, within Ga0059261_0383at 368.521 kb on + strand, within Ga0059261_0383at 368.522 kb on - strand, within Ga0059261_0383at 368.538 kb on + strandat 368.539 kb on - strandat 368.581 kb on + strand, within Ga0059261_0383at 368.581 kb on + strand, within Ga0059261_0383at 368.581 kb on + strand, within Ga0059261_0383at 368.581 kb on + strand, within Ga0059261_0383at 368.581 kb on + strand, within Ga0059261_0383at 368.582 kb on - strand, within Ga0059261_0383at 368.582 kb on - strand, within Ga0059261_0383at 368.582 kb on - strand, within Ga0059261_0383at 368.615 kb on + strand, within Ga0059261_0383at 368.615 kb on + strand, within Ga0059261_0383at 368.616 kb on - strand, within Ga0059261_0383at 368.616 kb on - strand, within Ga0059261_0383at 368.675 kb on + strand, within Ga0059261_0383at 368.676 kb on - strand, within Ga0059261_0383at 368.676 kb on - strand, within Ga0059261_0383at 368.792 kb on + strandat 368.792 kb on + strandat 368.792 kb on + strandat 368.792 kb on + strandat 368.792 kb on + strandat 368.792 kb on + strandat 368.793 kb on - strandat 368.793 kb on - strandat 368.793 kb on - strandat 368.793 kb on - strandat 369.139 kb on + strand, within Ga0059261_0384at 369.139 kb on + strand, within Ga0059261_0384at 369.140 kb on - strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.180 kb on + strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strand, within Ga0059261_0384at 369.181 kb on - strandat 369.201 kb on + strand, within Ga0059261_0384at 369.201 kb on + strand, within Ga0059261_0384at 369.430 kb on + strand, within Ga0059261_0384at 369.430 kb on + strand, within Ga0059261_0384at 369.431 kb on - strand, within Ga0059261_0384at 369.431 kb on - strand, within Ga0059261_0384at 369.431 kb on - strand, within Ga0059261_0384at 369.524 kb on + strand, within Ga0059261_0384at 369.525 kb on - strand, within Ga0059261_0384at 369.633 kb on - strand, within Ga0059261_0384

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 1 mM
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366,972 + Ga0059261_0381 0.89 -0.6
367,146 + +0.7
367,225 + Ga0059261_0382 0.14 -0.6
367,225 + Ga0059261_0382 0.14 -0.2
367,225 + Ga0059261_0382 0.14 -0.6
367,225 + Ga0059261_0382 0.14 -0.2
367,225 + Ga0059261_0382 0.14 -0.3
367,225 + Ga0059261_0382 0.14 -0.8
367,225 + Ga0059261_0382 0.14 +0.5
367,226 - Ga0059261_0382 0.14 -0.1
367,226 - Ga0059261_0382 0.14 -0.3
367,226 - Ga0059261_0382 0.14 -0.0
367,226 - Ga0059261_0382 0.14 -0.2
367,226 - Ga0059261_0382 0.14 -0.1
367,226 - +0.6
367,228 + Ga0059261_0382 0.15 -0.2
367,228 + Ga0059261_0382 0.15 +0.0
367,228 + Ga0059261_0382 0.15 +0.4
367,228 + Ga0059261_0382 0.15 +0.1
367,229 - Ga0059261_0382 0.15 -0.5
367,229 - Ga0059261_0382 0.15 +0.2
367,229 - Ga0059261_0382 0.15 +0.9
367,229 - Ga0059261_0382 0.15 -0.3
367,229 - Ga0059261_0382 0.15 +0.5
367,246 + Ga0059261_0382 0.17 +0.6
367,246 + +0.6
367,246 + Ga0059261_0382 0.17 -0.3
367,247 - Ga0059261_0382 0.17 +0.3
367,247 - Ga0059261_0382 0.17 -0.7
367,247 - Ga0059261_0382 0.17 -0.3
367,280 + +1.0
367,280 + Ga0059261_0382 0.21 -0.2
367,280 + Ga0059261_0382 0.21 +0.1
367,333 + Ga0059261_0382 0.27 -0.9
367,333 + Ga0059261_0382 0.27 -0.2
367,333 + Ga0059261_0382 0.27 +0.6
367,333 + Ga0059261_0382 0.27 +0.1
367,333 + Ga0059261_0382 0.27 +0.5
367,333 + Ga0059261_0382 0.27 +0.4
367,333 + Ga0059261_0382 0.27 -0.5
367,333 + Ga0059261_0382 0.27 +0.4
367,333 + Ga0059261_0382 0.27 +0.6
367,334 - Ga0059261_0382 0.27 -0.2
367,334 - Ga0059261_0382 0.27 +0.3
367,334 - Ga0059261_0382 0.27 -0.4
367,334 - Ga0059261_0382 0.27 +0.7
367,397 + Ga0059261_0382 0.34 -1.2
367,397 + Ga0059261_0382 0.34 -0.5
367,398 - Ga0059261_0382 0.35 -0.3
367,398 - Ga0059261_0382 0.35 +1.6
367,398 - Ga0059261_0382 0.35 +0.6
367,502 - Ga0059261_0382 0.47 -1.0
367,558 + Ga0059261_0382 0.53 +0.0
367,558 + Ga0059261_0382 0.53 +0.9
367,558 + Ga0059261_0382 0.53 +0.0
367,558 + Ga0059261_0382 0.53 +0.2
367,558 + Ga0059261_0382 0.53 +0.1
367,559 - Ga0059261_0382 0.53 -0.9
367,559 - Ga0059261_0382 0.53 -0.7
367,559 - Ga0059261_0382 0.53 +0.3
367,559 - Ga0059261_0382 0.53 +0.6
367,559 - +1.6
367,584 + Ga0059261_0382 0.56 -0.3
367,584 + Ga0059261_0382 0.56 -0.0
367,585 - Ga0059261_0382 0.56 -0.1
367,585 - Ga0059261_0382 0.56 +0.0
367,585 - Ga0059261_0382 0.56 +0.5
367,585 - Ga0059261_0382 0.56 -0.4
367,585 - Ga0059261_0382 0.56 +0.0
367,585 - Ga0059261_0382 0.56 -0.6
367,616 + Ga0059261_0382 0.60 +0.1
367,626 - Ga0059261_0382 0.61 -0.2
367,626 - Ga0059261_0382 0.61 -0.1
367,662 - Ga0059261_0382 0.65 +1.1
367,759 + Ga0059261_0382 0.77 -0.1
367,759 + Ga0059261_0382 0.77 -0.2
367,759 + Ga0059261_0382 0.77 +0.6
367,759 + Ga0059261_0382 0.77 -1.3
367,759 + Ga0059261_0382 0.77 -0.1
367,760 - Ga0059261_0382 0.77 -0.3
367,760 - Ga0059261_0382 0.77 -0.7
367,760 - Ga0059261_0382 0.77 +1.0
367,786 + Ga0059261_0382 0.80 -0.3
367,786 + Ga0059261_0382 0.80 -0.2
367,787 - Ga0059261_0382 0.80 -0.4
367,792 + Ga0059261_0382 0.81 +0.0
367,792 + Ga0059261_0382 0.81 +0.2
367,792 + Ga0059261_0382 0.81 +0.1
367,793 - Ga0059261_0382 0.81 +0.0
367,793 - Ga0059261_0382 0.81 -0.2
367,793 - Ga0059261_0382 0.81 -0.8
367,793 - Ga0059261_0382 0.81 -0.8
367,793 - Ga0059261_0382 0.81 -0.0
367,813 + Ga0059261_0382 0.83 -0.1
367,813 + Ga0059261_0382 0.83 +0.2
368,045 + -0.4
368,045 + -0.1
368,045 + -0.3
368,045 + +0.2
368,045 + +0.5
368,045 + -0.7
368,045 + +0.5
368,045 + +1.7
368,045 + -0.3
368,046 - -0.7
368,046 - -1.0
368,046 - -0.2
368,046 - +0.1
368,046 - -0.2
368,046 - +0.1
368,046 - -0.4
368,146 + Ga0059261_0383 0.22 +0.1
368,146 + Ga0059261_0383 0.22 +0.9
368,146 + Ga0059261_0383 0.22 +0.8
368,146 + Ga0059261_0383 0.22 +0.8
368,146 + Ga0059261_0383 0.22 -0.1
368,146 + Ga0059261_0383 0.22 +0.8
368,146 + Ga0059261_0383 0.22 -0.1
368,147 - Ga0059261_0383 0.22 +0.1
368,147 - Ga0059261_0383 0.22 +0.5
368,147 - Ga0059261_0383 0.22 +0.8
368,147 - +0.6
368,254 + Ga0059261_0383 0.35 +0.0
368,254 + Ga0059261_0383 0.35 -0.3
368,254 + -1.4
368,254 + Ga0059261_0383 0.35 -0.3
368,255 - Ga0059261_0383 0.35 -0.0
368,371 + Ga0059261_0383 0.49 +0.6
368,371 + Ga0059261_0383 0.49 +0.5
368,414 - Ga0059261_0383 0.54 +0.6
368,521 + Ga0059261_0383 0.67 -0.1
368,521 + Ga0059261_0383 0.67 -0.7
368,521 + Ga0059261_0383 0.67 +0.5
368,521 + Ga0059261_0383 0.67 +0.4
368,521 + Ga0059261_0383 0.67 +0.3
368,522 - Ga0059261_0383 0.67 +0.6
368,538 + +0.0
368,539 - -1.4
368,581 + Ga0059261_0383 0.74 +0.1
368,581 + Ga0059261_0383 0.74 +0.4
368,581 + Ga0059261_0383 0.74 +0.0
368,581 + Ga0059261_0383 0.74 +0.4
368,581 + Ga0059261_0383 0.74 +0.2
368,582 - Ga0059261_0383 0.74 +0.2
368,582 - Ga0059261_0383 0.74 +1.1
368,582 - Ga0059261_0383 0.74 +0.8
368,615 + Ga0059261_0383 0.78 +0.6
368,615 + Ga0059261_0383 0.78 -0.2
368,616 - Ga0059261_0383 0.79 +0.2
368,616 - Ga0059261_0383 0.79 +0.4
368,675 + Ga0059261_0383 0.86 -0.2
368,676 - Ga0059261_0383 0.86 -0.5
368,676 - Ga0059261_0383 0.86 +0.0
368,792 + +0.2
368,792 + -1.2
368,792 + +1.0
368,792 + +0.5
368,792 + -0.4
368,792 + +0.1
368,793 - +0.4
368,793 - +0.6
368,793 - +0.1
368,793 - -0.6
369,139 + Ga0059261_0384 0.27 +0.5
369,139 + Ga0059261_0384 0.27 -0.0
369,140 - Ga0059261_0384 0.27 -0.8
369,180 + Ga0059261_0384 0.30 +0.7
369,180 + Ga0059261_0384 0.30 -0.1
369,180 + Ga0059261_0384 0.30 -0.8
369,180 + Ga0059261_0384 0.30 +1.0
369,180 + Ga0059261_0384 0.30 +0.1
369,180 + Ga0059261_0384 0.30 +0.3
369,180 + Ga0059261_0384 0.30 +0.4
369,180 + Ga0059261_0384 0.30 +0.3
369,181 - Ga0059261_0384 0.30 -0.1
369,181 - Ga0059261_0384 0.30 -0.1
369,181 - Ga0059261_0384 0.30 +0.5
369,181 - Ga0059261_0384 0.30 -0.5
369,181 - Ga0059261_0384 0.30 -1.3
369,181 - Ga0059261_0384 0.30 -0.2
369,181 - Ga0059261_0384 0.30 -0.4
369,181 - +0.2
369,201 + Ga0059261_0384 0.31 -1.6
369,201 + Ga0059261_0384 0.31 -0.6
369,430 + Ga0059261_0384 0.49 +1.2
369,430 + Ga0059261_0384 0.49 +2.9
369,431 - Ga0059261_0384 0.49 -0.3
369,431 - Ga0059261_0384 0.49 -0.1
369,431 - Ga0059261_0384 0.49 +0.1
369,524 + Ga0059261_0384 0.56 +0.2
369,525 - Ga0059261_0384 0.56 +0.7
369,633 - Ga0059261_0384 0.65 -0.1

Or see this region's nucleotide sequence