Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03500

Experiment: PYE with Phosphomycin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Phosphomycin 0.005 mg/ml
3,656,158	-		CCNA_03497	0.21	-1.5
3,656,168	-		CCNA_03497	0.24	+0.0
3,656,177	-		CCNA_03497	0.26	-0.2
3,656,193	+		CCNA_03497	0.29	-2.4
3,656,199	+		CCNA_03497	0.30	-0.8
3,656,201	-		CCNA_03497	0.31	+2.3
3,656,207	-		CCNA_03497	0.32	+2.2
3,656,216	-		CCNA_03497	0.34	-0.4
3,656,217	-		CCNA_03497	0.34	+1.0
3,656,217	-		CCNA_03497	0.34	+0.6
3,656,247	+		CCNA_03497	0.41	-1.0
3,656,286	+		CCNA_03497	0.50	-1.8
3,656,294	+		CCNA_03497	0.51	-1.7
3,656,338	+		CCNA_03497	0.61	-2.5
3,656,338	+		CCNA_03497	0.61	-0.9
3,656,338	+		CCNA_03497	0.61	+0.7
3,656,338	+		CCNA_03497	0.61	-1.5
3,656,338	+		CCNA_03497	0.61	-0.3
3,656,346	-		CCNA_03497	0.63	-0.2
3,656,346	-		CCNA_03497	0.63	+1.6
3,656,346	-		CCNA_03497	0.63	-0.6
3,656,356	-		CCNA_03497	0.65	+1.0
3,656,370	+		CCNA_03497	0.68	+0.5
3,656,441	+		CCNA_03497	0.84	+0.3
3,656,504	+				-0.7
3,656,504	+				-0.4
3,656,507	+				-2.1
3,656,519	+				-2.5
3,656,519	+				-3.1
3,656,519	+				-1.5
3,656,541	+		CCNA_03498	0.10	-0.2
3,656,552	+		CCNA_03498	0.14	-2.7
3,656,576	+		CCNA_03498	0.22	-1.3
3,656,612	+		CCNA_03498	0.34	-3.2
3,656,612	+		CCNA_03498	0.34	-1.4
3,656,612	+		CCNA_03498	0.34	-3.8
3,656,612	+		CCNA_03498	0.34	-3.2
3,656,647	+		CCNA_03498	0.46	-2.2
3,656,647	+		CCNA_03498	0.46	-2.6
3,656,647	+		CCNA_03498	0.46	-2.3
3,656,655	+		CCNA_03498	0.49	-3.9
3,656,655	+		CCNA_03498	0.49	-2.1
3,656,728	+		CCNA_03498	0.73	-1.6
3,656,747	+		CCNA_03498	0.80	-2.1
3,656,793	+				-1.1
3,656,801	-				-0.8
3,656,817	+				-0.3
3,656,817	+				-1.6
3,656,817	+				+0.4
3,656,817	+				-2.7
3,656,825	-				+0.2
3,656,847	+				-1.5
3,656,857	+				-0.1
3,656,857	+				+1.0
3,656,857	+				-1.3
3,656,874	+				-0.2
3,656,874	+				-0.4
3,656,879	+				+1.9
3,656,882	-		CCNA_03499	0.10	+0.4
3,656,882	-		CCNA_03499	0.10	-0.1
3,656,882	-		CCNA_03499	0.10	+1.0
3,656,882	-		CCNA_03499	0.10	+1.3
3,656,912	-		CCNA_03499	0.20	+3.8
3,656,912	-		CCNA_03499	0.20	-2.2
3,656,946	-		CCNA_03499	0.31	+1.0
3,656,951	-		CCNA_03499	0.33	+2.0
3,656,953	+		CCNA_03499	0.33	-0.8
3,656,956	-		CCNA_03499	0.34	-1.3
3,656,961	-		CCNA_03499	0.36	-0.7
3,656,989	+		CCNA_03499	0.45	-2.2
3,657,002	-		CCNA_03499	0.49	+1.9
3,657,080	+		CCNA_03499	0.74	+2.9
3,657,080	+		CCNA_03499	0.74	+0.0
3,657,140	+				+1.2
3,657,140	+				-0.2
3,657,140	+				+0.7
3,657,140	+				+1.0
3,657,148	-				-2.0
3,657,148	-				-0.9
3,657,148	-				+2.2
3,657,153	+				-1.2
3,657,243	-				-0.2
3,657,245	+				-1.4
3,657,245	+				-0.7
3,657,245	+				+1.0
3,657,253	-				-2.8
3,657,283	+				+0.6
3,657,283	+				-0.8
3,657,285	-				-1.4
3,657,285	-				-0.8
3,657,291	-				+1.9
3,657,296	-		CCNA_03500	0.10	-0.4
3,657,323	-		CCNA_03500	0.12	+0.0
3,657,330	+		CCNA_03500	0.12	+1.0
3,657,350	-		CCNA_03500	0.14	-1.0
3,657,355	-		CCNA_03500	0.14	-1.9
3,657,383	+		CCNA_03500	0.16	+0.6
3,657,386	-		CCNA_03500	0.16	-0.4
3,657,398	+		CCNA_03500	0.17	+1.0
3,657,410	+		CCNA_03500	0.18	+0.6
3,657,432	-		CCNA_03500	0.20	+0.4
3,657,456	-		CCNA_03500	0.21	+2.4
3,657,458	+		CCNA_03500	0.21	-0.3
3,657,463	-		CCNA_03500	0.22	+0.2
3,657,471	+		CCNA_03500	0.22	+0.3
3,657,479	-		CCNA_03500	0.23	+0.8
3,657,506	+		CCNA_03500	0.25	-0.7
3,657,519	-		CCNA_03500	0.26	+0.4
3,657,673	-		CCNA_03500	0.37	-0.2
3,657,696	+				+2.6
3,657,720	+		CCNA_03500	0.40	+1.6
3,657,720	+		CCNA_03500	0.40	+0.3
3,657,720	+		CCNA_03500	0.40	-1.1
3,657,723	-		CCNA_03500	0.40	+0.0
3,657,728	-		CCNA_03500	0.41	-2.2
3,657,728	-		CCNA_03500	0.41	+0.0
3,657,728	-		CCNA_03500	0.41	+2.7
3,657,728	-		CCNA_03500	0.41	-0.7
3,657,728	-		CCNA_03500	0.41	-0.7
3,657,728	-		CCNA_03500	0.41	-1.5
3,657,728	-		CCNA_03500	0.41	-0.4
3,657,732	+		CCNA_03500	0.41	-1.8
3,657,757	-		CCNA_03500	0.43	+1.6
3,657,786	-		CCNA_03500	0.45	+2.6
3,657,786	-		CCNA_03500	0.45	+0.9
3,657,786	-		CCNA_03500	0.45	-2.2
3,657,786	-		CCNA_03500	0.45	+0.6
3,657,786	-		CCNA_03500	0.45	-1.4
3,657,809	+		CCNA_03500	0.46	+2.6
3,657,809	+		CCNA_03500	0.46	+2.0
3,657,817	-		CCNA_03500	0.47	-0.6
3,657,859	-		CCNA_03500	0.50	+1.9
3,657,946	+		CCNA_03500	0.56	-2.0
3,657,948	+		CCNA_03500	0.56	+0.6
3,657,968	+		CCNA_03500	0.58	+0.6
3,657,979	+		CCNA_03500	0.58	+1.0
3,657,987	-		CCNA_03500	0.59	-0.3
3,658,015	+		CCNA_03500	0.61	+0.8
3,658,016	+		CCNA_03500	0.61	-1.1
3,658,034	-		CCNA_03500	0.62	+0.4
3,658,046	-		CCNA_03500	0.63	-1.2
3,658,126	-		CCNA_03500	0.69	-1.5
3,658,175	-		CCNA_03500	0.72	+0.3
3,658,186	+		CCNA_03500	0.73	+0.3
3,658,193	-		CCNA_03500	0.74	+4.6
3,658,214	-		CCNA_03500	0.75	+0.0
3,658,216	+		CCNA_03500	0.75	-0.5
3,658,217	+		CCNA_03500	0.75	-0.7
3,658,227	+		CCNA_03500	0.76	+1.0
3,658,237	-		CCNA_03500	0.77	-0.7
3,658,255	+		CCNA_03500	0.78	-0.8
3,658,255	+		CCNA_03500	0.78	-1.9
3,658,263	-		CCNA_03500	0.79	-1.5
3,658,263	-		CCNA_03500	0.79	-0.2
3,658,297	+		CCNA_03500	0.81	-1.5
3,658,305	-		CCNA_03500	0.82	-1.9
3,658,372	-		CCNA_03500	0.86	-2.4
3,658,372	-		CCNA_03500	0.86	+1.0
3,658,379	+		CCNA_03500	0.87	-0.9
3,658,521	+				+2.4
3,658,540	-				-1.0
3,658,543	+				-0.9
3,658,554	+				-0.4
3,658,560	+				+2.9
3,658,568	-				-0.7
3,658,580	-				-1.9
3,658,587	-				-0.6
3,659,516	+				+1.0
3,659,516	+				-2.2
3,659,527	+				+1.1