Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03422

Experiment: PYE with Phosphomycin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Phosphomycin 0.005 mg/ml
3,586,904	+				+1.7
3,586,904	+		CCNA_03421	0.27	+0.1
3,586,904	+		CCNA_03421	0.27	-1.5
3,586,904	+		CCNA_03421	0.27	+1.7
3,586,904	+		CCNA_03421	0.27	+1.1
3,586,912	-		CCNA_03421	0.28	-1.0
3,586,912	-		CCNA_03421	0.28	-0.9
3,586,912	-		CCNA_03421	0.28	-1.0
3,586,912	-		CCNA_03421	0.28	-1.3
3,586,912	-		CCNA_03421	0.28	-1.9
3,586,914	+		CCNA_03421	0.28	-0.8
3,586,922	-		CCNA_03421	0.28	-0.7
3,586,922	-		CCNA_03421	0.28	-1.8
3,586,922	-		CCNA_03421	0.28	-1.1
3,586,924	+		CCNA_03421	0.29	-0.2
3,586,934	-		CCNA_03421	0.29	+0.3
3,586,948	+		CCNA_03421	0.30	-0.9
3,586,951	-		CCNA_03421	0.31	+2.0
3,586,951	-		CCNA_03421	0.31	-0.3
3,587,010	+		CCNA_03421	0.35	-1.5
3,587,048	+		CCNA_03421	0.38	-0.3
3,587,050	-		CCNA_03421	0.38	+1.9
3,587,086	+		CCNA_03421	0.40	-0.9
3,587,094	-		CCNA_03421	0.41	+1.2
3,587,094	-		CCNA_03421	0.41	+0.2
3,587,094	-		CCNA_03421	0.41	+0.5
3,587,128	-		CCNA_03421	0.44	+1.4
3,587,153	+		CCNA_03421	0.45	-1.4
3,587,153	+		CCNA_03421	0.45	-1.4
3,587,161	+		CCNA_03421	0.46	-1.5
3,587,177	-		CCNA_03421	0.47	+1.1
3,587,177	-		CCNA_03421	0.47	-0.4
3,587,210	+		CCNA_03421	0.50	+0.1
3,587,210	+		CCNA_03421	0.50	-0.8
3,587,229	+		CCNA_03421	0.51	+0.3
3,587,237	+		CCNA_03421	0.52	-3.8
3,587,237	-		CCNA_03421	0.52	+1.1
3,587,258	+		CCNA_03421	0.53	+0.7
3,587,270	+		CCNA_03421	0.54	-0.5
3,587,278	-		CCNA_03421	0.55	-1.2
3,587,286	+		CCNA_03421	0.55	+1.1
3,587,305	+		CCNA_03421	0.57	-0.7
3,587,313	-		CCNA_03421	0.57	-1.4
3,587,313	-		CCNA_03421	0.57	-0.8
3,587,313	-		CCNA_03421	0.57	-0.2
3,587,337	+		CCNA_03421	0.59	-1.2
3,587,359	-		CCNA_03421	0.61	-1.2
3,587,375	+		CCNA_03421	0.62	+1.1
3,587,383	-		CCNA_03421	0.62	-1.7
3,587,383	-		CCNA_03421	0.62	+0.3
3,587,383	-		CCNA_03421	0.62	-2.8
3,587,383	-		CCNA_03421	0.62	-0.2
3,587,414	-		CCNA_03421	0.65	-1.3
3,587,416	+		CCNA_03421	0.65	-0.7
3,587,463	+		CCNA_03421	0.68	-1.7
3,587,496	-		CCNA_03421	0.71	+0.2
3,587,499	+		CCNA_03421	0.71	+1.2
3,587,602	+		CCNA_03421	0.79	-2.8
3,587,610	-		CCNA_03421	0.79	-0.9
3,587,673	-		CCNA_03421	0.84	-1.5
3,587,683	+		CCNA_03421	0.85	+0.3
3,587,683	+		CCNA_03421	0.85	+2.4
3,587,683	+		CCNA_03421	0.85	-0.5
3,587,683	+		CCNA_03421	0.85	-0.5
3,587,691	-		CCNA_03421	0.85	+1.2
3,587,691	-		CCNA_03421	0.85	+0.6
3,587,691	-		CCNA_03421	0.85	+2.9
3,587,717	-		CCNA_03421	0.87	-1.2
3,587,731	+		CCNA_03421	0.88	-0.0
3,587,731	+		CCNA_03421	0.88	+0.3
3,587,731	+		CCNA_03421	0.88	-1.2
3,587,732	+		CCNA_03421	0.88	+0.3
3,587,732	+		CCNA_03421	0.88	-1.6
3,587,789	+				+0.3
3,587,789	+				-0.7
3,587,797	-				-0.9
3,587,802	-				+0.3
3,587,826	+				+0.7
3,587,897	+				+0.3
3,587,897	+				-1.2
3,587,938	-				-1.8
3,587,938	-				-1.0
3,587,940	-				-0.4
3,587,976	+				+0.7
3,587,976	+				+0.7
3,587,976	+				-0.5
3,587,984	-				-0.1
3,588,010	+				+1.1
3,588,010	+				-0.3
3,588,018	-				+0.7
3,588,018	-				+0.2
3,588,061	+				-0.2
3,588,097	+		CCNA_03422	0.11	+0.1
3,588,105	-		CCNA_03422	0.12	-2.4
3,588,121	+		CCNA_03422	0.12	-1.3
3,588,128	+		CCNA_03422	0.13	+0.7
3,588,129	-		CCNA_03422	0.13	+0.9
3,588,136	-		CCNA_03422	0.13	+1.2
3,588,136	-		CCNA_03422	0.13	-1.6
3,588,151	-		CCNA_03422	0.14	-0.9
3,588,151	-		CCNA_03422	0.14	+0.8
3,588,151	-		CCNA_03422	0.14	+3.2
3,588,164	+		CCNA_03422	0.15	+1.1
3,588,164	+		CCNA_03422	0.15	+1.7
3,588,164	+		CCNA_03422	0.15	-1.9
3,588,172	-		CCNA_03422	0.15	+1.2
3,588,172	-		CCNA_03422	0.15	+0.8
3,588,225	+		CCNA_03422	0.18	-1.2
3,588,225	+		CCNA_03422	0.18	+1.2
3,588,231	+		CCNA_03422	0.19	-1.0
3,588,233	-		CCNA_03422	0.19	+1.9
3,588,239	+		CCNA_03422	0.19	-1.0
3,588,247	-		CCNA_03422	0.19	-1.8
3,588,254	+		CCNA_03422	0.20	+1.7
3,588,257	-		CCNA_03422	0.20	-0.2
3,588,262	-		CCNA_03422	0.20	+1.3
3,588,263	+		CCNA_03422	0.20	+1.7
3,588,264	+		CCNA_03422	0.20	-1.4
3,588,339	-		CCNA_03422	0.25	-1.8
3,588,341	+		CCNA_03422	0.25	+1.2
3,588,373	-		CCNA_03422	0.26	-0.5
3,588,383	-		CCNA_03422	0.27	-0.8
3,588,409	+		CCNA_03422	0.28	-0.5
3,588,411	-		CCNA_03422	0.29	-0.5
3,588,417	-		CCNA_03422	0.29	-0.6
3,588,417	-		CCNA_03422	0.29	+0.3
3,588,417	-		CCNA_03422	0.29	+0.1
3,588,417	-		CCNA_03422	0.29	-0.5
3,588,422	-		CCNA_03422	0.29	+1.6
3,588,448	+		CCNA_03422	0.31	+1.7
3,588,448	+		CCNA_03422	0.31	-0.5
3,588,448	+		CCNA_03422	0.31	+0.7
3,588,448	+		CCNA_03422	0.31	+0.1
3,588,448	+		CCNA_03422	0.31	+0.3
3,588,448	+		CCNA_03422	0.31	+0.1
3,588,448	+		CCNA_03422	0.31	+2.2
3,588,448	+		CCNA_03422	0.31	-0.7
3,588,456	-		CCNA_03422	0.31	+2.8
3,588,456	-		CCNA_03422	0.31	-0.5
3,588,456	-		CCNA_03422	0.31	-2.0
3,588,456	-		CCNA_03422	0.31	+2.1
3,588,456	-		CCNA_03422	0.31	+0.3
3,588,456	-		CCNA_03422	0.31	+2.7
3,588,456	-		CCNA_03422	0.31	-1.2
3,588,456	-		CCNA_03422	0.31	-1.0
3,588,478	-		CCNA_03422	0.32	+0.7
3,588,481	-		CCNA_03422	0.32	-1.3
3,588,501	-		CCNA_03422	0.34	-1.2
3,588,506	+		CCNA_03422	0.34	-0.8
3,588,506	+		CCNA_03422	0.34	-0.9
3,588,506	-		CCNA_03422	0.34	-0.7
3,588,514	-		CCNA_03422	0.34	-1.2
3,588,514	-		CCNA_03422	0.34	-2.6
3,588,514	-		CCNA_03422	0.34	-0.5
3,588,529	+		CCNA_03422	0.35	-0.2
3,588,529	+		CCNA_03422	0.35	-0.8
3,588,529	+		CCNA_03422	0.35	+0.7
3,588,529	+		CCNA_03422	0.35	+0.7
3,588,529	+		CCNA_03422	0.35	-1.8
3,588,529	+		CCNA_03422	0.35	-1.4
3,588,529	+		CCNA_03422	0.35	+2.7
3,588,529	+		CCNA_03422	0.35	-0.2
3,588,537	-		CCNA_03422	0.36	+1.0
3,588,537	-		CCNA_03422	0.36	+1.0
3,588,537	-		CCNA_03422	0.36	-0.4
3,588,537	-		CCNA_03422	0.36	+0.3
3,588,559	-		CCNA_03422	0.37	-1.3
3,588,559	-		CCNA_03422	0.37	+0.1
3,588,608	-		CCNA_03422	0.40	+2.1
3,588,652	-		CCNA_03422	0.42	-0.9
3,588,682	-		CCNA_03422	0.44	+1.2
3,588,707	-		CCNA_03422	0.45	-0.9
3,588,709	+		CCNA_03422	0.45	-1.2
3,588,717	-		CCNA_03422	0.46	-0.9
3,588,729	-		CCNA_03422	0.46	+1.7
3,588,758	+		CCNA_03422	0.48	-0.7
3,588,761	-		CCNA_03422	0.48	-0.2
3,588,761	-		CCNA_03422	0.48	-2.3
3,588,785	+		CCNA_03422	0.49	+1.7
3,588,785	+		CCNA_03422	0.49	-0.2
3,588,793	-		CCNA_03422	0.50	+0.2
3,588,803	+		CCNA_03422	0.50	-1.0
3,588,806	+		CCNA_03422	0.51	-0.9
3,588,806	+		CCNA_03422	0.51	-0.7
3,588,812	+		CCNA_03422	0.51	-1.0
3,588,814	-		CCNA_03422	0.51	-1.2
3,588,854	-		CCNA_03422	0.53	-3.0
3,588,856	+		CCNA_03422	0.53	+1.1
3,588,856	+		CCNA_03422	0.53	-0.8
3,588,857	+		CCNA_03422	0.53	+0.3
3,588,863	+		CCNA_03422	0.54	+1.1
3,588,865	-		CCNA_03422	0.54	-0.9
3,588,871	-		CCNA_03422	0.54	-0.9
3,588,876	-		CCNA_03422	0.55	+0.1
3,588,881	-		CCNA_03422	0.55	-1.3
3,588,881	-		CCNA_03422	0.55	+0.7
3,588,905	+		CCNA_03422	0.56	+0.3
3,588,990	+		CCNA_03422	0.61	+0.8
3,588,993	-		CCNA_03422	0.61	-2.7
3,588,993	-		CCNA_03422	0.61	-0.5
3,588,998	-		CCNA_03422	0.61	-2.5
3,588,998	-		CCNA_03422	0.61	+1.7
3,589,076	+		CCNA_03422	0.66	+0.7
3,589,084	+		CCNA_03422	0.66	+4.5
3,589,084	+		CCNA_03422	0.66	-0.7
3,589,084	+		CCNA_03422	0.66	-0.5
3,589,084	+		CCNA_03422	0.66	+0.1
3,589,092	-		CCNA_03422	0.67	-1.3
3,589,092	-		CCNA_03422	0.67	-0.9
3,589,107	+		CCNA_03422	0.67	-0.5
3,589,151	-		CCNA_03422	0.70	+0.2
3,589,159	-		CCNA_03422	0.70	-1.8
3,589,193	+		CCNA_03422	0.72	+0.0
3,589,201	-		CCNA_03422	0.73	+3.1
3,589,274	+		CCNA_03422	0.77	+1.7
3,589,274	+		CCNA_03422	0.77	+0.1
3,589,274	+		CCNA_03422	0.77	-0.3
3,589,282	-		CCNA_03422	0.77	-0.2
3,589,282	-		CCNA_03422	0.77	+0.3
3,589,314	+		CCNA_03422	0.79	+1.1
3,589,320	-		CCNA_03422	0.79	+1.7
3,589,323	+		CCNA_03422	0.80	+1.7
3,589,323	+		CCNA_03422	0.80	-0.7
3,589,331	-		CCNA_03422	0.80	-0.9
3,589,337	+		CCNA_03422	0.80	-0.2
3,589,370	-		CCNA_03422	0.82	+0.5
3,589,402	-		CCNA_03422	0.84	+1.9
3,589,405	+		CCNA_03422	0.84	+1.1
3,589,405	+		CCNA_03422	0.84	+2.7
3,589,447	+		CCNA_03422	0.86	-0.8
3,589,457	+		CCNA_03422	0.87	-0.5
3,589,464	+		CCNA_03422	0.87	-1.3
3,589,464	+		CCNA_03422	0.87	-1.6
3,589,520	+				-1.6
3,589,539	-				+0.7
3,589,594	+				+1.7
3,589,594	+				-0.2
3,589,647	+				+0.3
3,589,648	+				+0.1
3,589,655	-				+0.4
3,589,678	-				-0.9
3,589,678	-				-0.5
3,589,698	+				-0.2
3,589,729	+				-1.0
3,589,737	-				+0.8
3,589,737	-				-0.8
3,589,764	+				+1.1
3,589,784	-		CCNA_03423	0.14	+4.6
3,589,794	-		CCNA_03423	0.16	+1.7
3,589,800	+		CCNA_03423	0.18	+0.7
3,589,808	-		CCNA_03423	0.20	+0.2
3,589,821	-		CCNA_03423	0.23	-1.2
3,589,870	+		CCNA_03423	0.36	-0.2
3,589,891	+		CCNA_03423	0.41	+0.1
3,589,891	+		CCNA_03423	0.41	+1.7
3,589,893	+		CCNA_03423	0.42	+0.3
3,589,899	-		CCNA_03423	0.43	-1.9
3,589,899	-		CCNA_03423	0.43	-1.5
3,589,914	-		CCNA_03423	0.47	-0.3
3,589,914	-		CCNA_03423	0.47	-1.2
3,589,924	-		CCNA_03423	0.49	-0.2
3,589,963	+		CCNA_03423	0.59	-0.4
3,589,963	+		CCNA_03423	0.59	-0.3
3,589,971	-		CCNA_03423	0.62	-2.4
3,589,971	-		CCNA_03423	0.62	-2.2
3,589,971	-		CCNA_03423	0.62	-0.2
3,589,975	+		CCNA_03423	0.63	+1.1
3,589,983	-		CCNA_03423	0.65	-0.2
3,589,983	-		CCNA_03423	0.65	+0.7
3,589,983	-		CCNA_03423	0.65	-0.8
3,589,983	-		CCNA_03423	0.65	+0.3
3,589,997	-		CCNA_03423	0.68	-0.3
3,589,997	-		CCNA_03423	0.68	-0.2
3,589,997	-		CCNA_03423	0.68	+0.3
3,589,997	-		CCNA_03423	0.68	+1.7
3,589,997	-		CCNA_03423	0.68	-0.5
3,590,003	-		CCNA_03423	0.70	+1.7
3,590,047	-		CCNA_03423	0.81	+0.3
3,590,049	+		CCNA_03423	0.82	+1.7
3,590,049	+		CCNA_03423	0.82	-0.5
3,590,049	+		CCNA_03423	0.82	-0.2
3,590,057	-		CCNA_03423	0.84	-2.4
3,590,057	-		CCNA_03423	0.84	-2.6
3,590,057	-		CCNA_03423	0.84	-1.9
3,590,057	-		CCNA_03423	0.84	+0.1
3,590,057	-		CCNA_03423	0.84	-0.3
3,590,057	-		CCNA_03423	0.84	-0.5
3,590,057	-		CCNA_03423	0.84	+1.3
3,590,057	-		CCNA_03423	0.84	-1.1
3,590,057	-		CCNA_03423	0.84	-2.2
3,590,140	+				-1.3
3,590,140	+				-0.8
3,590,140	+				-2.0
3,590,140	+				-0.2
3,590,148	-				-0.8
3,590,148	-				+1.0
3,590,148	-				-1.0
3,590,148	-				-0.9
3,590,148	-				-2.1
3,590,148	-				-1.3
3,590,148	-				+0.4
3,590,148	-				+1.1
3,590,188	+				+1.0
3,590,190	+				-0.2
3,590,196	-				+1.7
3,590,198	-				-1.2
3,590,220	-				+0.1
3,590,220	-				+0.3
3,590,225	-				-3.0
3,590,324	-				+0.1
3,590,471	+		CCNA_03424	0.15	-0.8
3,590,471	+		CCNA_03424	0.15	-1.7
3,590,479	-		CCNA_03424	0.15	+1.7
3,590,523	+		CCNA_03424	0.18	-1.9
3,590,523	+		CCNA_03424	0.18	+0.7
3,590,523	+		CCNA_03424	0.18	-1.9
3,590,528	+		CCNA_03424	0.19	-0.3
3,590,538	+		CCNA_03424	0.19	-0.2
3,590,568	+		CCNA_03424	0.21	+2.2
3,590,622	+		CCNA_03424	0.25	-1.0
3,590,622	+		CCNA_03424	0.25	+1.7
3,590,654	-		CCNA_03424	0.27	-0.2
3,590,680	+		CCNA_03424	0.29	-3.0
3,590,680	+		CCNA_03424	0.29	-0.3