Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01616 and CCNA_01617 overlap by 1 nucleotides CCNA_01617 and CCNA_01618 are separated by 47 nucleotides CCNA_01618 and CCNA_01619 are separated by 2 nucleotides CCNA_01619 and CCNA_01620 are separated by 49 nucleotides
CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139
_01616
CCNA_01617: CCNA_01617 - acetyltransferase, at 1,739,139 to 1,739,690
_01617
CCNA_01618: CCNA_01618 - uracil-DNA glycosylase, at 1,739,738 to 1,740,415
_01618
CCNA_01619: CCNA_01619 - NYN domain protein, at 1,740,418 to 1,741,014
_01619
CCNA_01620: CCNA_01620 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,741,064 to 1,741,558
_01620
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1739.133 kb on + strand at 1739.242 kb on + strand, within CCNA_01617 at 1739.285 kb on - strand, within CCNA_01617 at 1739.311 kb on + strand, within CCNA_01617 at 1739.311 kb on + strand, within CCNA_01617 at 1739.313 kb on + strand, within CCNA_01617 at 1739.313 kb on + strand, within CCNA_01617 at 1739.326 kb on - strand, within CCNA_01617 at 1739.387 kb on - strand, within CCNA_01617 at 1739.395 kb on + strand, within CCNA_01617 at 1739.395 kb on + strand, within CCNA_01617 at 1739.415 kb on + strand, within CCNA_01617 at 1739.424 kb on - strand, within CCNA_01617 at 1739.466 kb on + strand, within CCNA_01617 at 1739.513 kb on + strand, within CCNA_01617 at 1739.547 kb on + strand, within CCNA_01617 at 1739.552 kb on + strand, within CCNA_01617 at 1739.555 kb on - strand, within CCNA_01617 at 1739.560 kb on - strand, within CCNA_01617 at 1739.569 kb on - strand, within CCNA_01617 at 1739.597 kb on + strand, within CCNA_01617 at 1739.644 kb on + strand at 1739.723 kb on - strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.801 kb on + strand at 1739.804 kb on - strand at 1739.806 kb on + strand, within CCNA_01618 at 1739.929 kb on + strand, within CCNA_01618 at 1739.955 kb on - strand, within CCNA_01618 at 1739.965 kb on - strand, within CCNA_01618 at 1740.014 kb on - strand, within CCNA_01618 at 1740.022 kb on + strand, within CCNA_01618 at 1740.066 kb on + strand, within CCNA_01618 at 1740.066 kb on + strand, within CCNA_01618 at 1740.074 kb on - strand, within CCNA_01618 at 1740.122 kb on - strand, within CCNA_01618 at 1740.156 kb on + strand, within CCNA_01618 at 1740.164 kb on - strand, within CCNA_01618 at 1740.164 kb on - strand, within CCNA_01618 at 1740.164 kb on - strand, within CCNA_01618 at 1740.274 kb on + strand, within CCNA_01618 at 1740.297 kb on + strand, within CCNA_01618 at 1740.297 kb on + strand, within CCNA_01618 at 1740.353 kb on + strand at 1740.354 kb on - strand at 1740.411 kb on + strand at 1740.411 kb on + strand at 1740.413 kb on - strand at 1740.416 kb on + strand at 1740.419 kb on - strand at 1740.421 kb on + strand at 1740.421 kb on + strand at 1740.424 kb on - strand at 1740.426 kb on + strand at 1740.458 kb on - strand at 1740.460 kb on + strand at 1740.468 kb on - strand at 1740.616 kb on + strand, within CCNA_01619 at 1740.626 kb on + strand, within CCNA_01619 at 1740.626 kb on + strand, within CCNA_01619 at 1740.634 kb on - strand, within CCNA_01619 at 1740.634 kb on - strand, within CCNA_01619 at 1740.634 kb on - strand at 1740.634 kb on - strand, within CCNA_01619 at 1740.634 kb on - strand, within CCNA_01619 at 1740.696 kb on + strand, within CCNA_01619 at 1740.702 kb on - strand, within CCNA_01619 at 1740.727 kb on - strand, within CCNA_01619 at 1740.779 kb on + strand, within CCNA_01619 at 1740.789 kb on + strand, within CCNA_01619 at 1740.797 kb on - strand, within CCNA_01619 at 1740.797 kb on - strand, within CCNA_01619 at 1740.804 kb on + strand, within CCNA_01619 at 1740.820 kb on - strand, within CCNA_01619 at 1740.876 kb on - strand, within CCNA_01619 at 1740.888 kb on - strand, within CCNA_01619 at 1740.915 kb on + strand, within CCNA_01619 at 1740.915 kb on + strand, within CCNA_01619 at 1740.915 kb on + strand, within CCNA_01619 at 1740.923 kb on - strand, within CCNA_01619 at 1740.956 kb on + strand at 1740.956 kb on + strand at 1740.956 kb on + strand at 1740.964 kb on - strand at 1740.964 kb on - strand at 1740.964 kb on - strand at 1740.964 kb on - strand at 1740.964 kb on - strand at 1740.984 kb on + strand at 1740.992 kb on - strand at 1740.992 kb on - strand at 1741.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 1,739,133 + -0.6 1,739,242 + CCNA_01617 0.19 -1.6 1,739,285 - CCNA_01617 0.26 -0.3 1,739,311 + CCNA_01617 0.31 -0.5 1,739,311 + CCNA_01617 0.31 -0.1 1,739,313 + CCNA_01617 0.32 +1.9 1,739,313 + CCNA_01617 0.32 -1.8 1,739,326 - CCNA_01617 0.34 -2.1 1,739,387 - CCNA_01617 0.45 +1.5 1,739,395 + CCNA_01617 0.46 -0.1 1,739,395 + CCNA_01617 0.46 -0.3 1,739,415 + CCNA_01617 0.50 +2.4 1,739,424 - CCNA_01617 0.52 +0.1 1,739,466 + CCNA_01617 0.59 -0.9 1,739,513 + CCNA_01617 0.68 -0.6 1,739,547 + CCNA_01617 0.74 -1.1 1,739,552 + CCNA_01617 0.75 +0.4 1,739,555 - CCNA_01617 0.75 -1.0 1,739,560 - CCNA_01617 0.76 -0.6 1,739,569 - CCNA_01617 0.78 +1.3 1,739,597 + CCNA_01617 0.83 +0.3 1,739,644 + -0.0 1,739,723 - +0.9 1,739,760 + -0.5 1,739,760 + +6.5 1,739,760 + +6.5 1,739,760 + +3.7 1,739,760 + +5.6 1,739,768 - +1.9 1,739,768 - -1.0 1,739,768 - +1.2 1,739,768 - +1.9 1,739,768 - +1.6 1,739,768 - +2.4 1,739,768 - +0.3 1,739,768 - +0.3 1,739,768 - -0.5 1,739,801 + +7.5 1,739,804 - +6.9 1,739,806 + CCNA_01618 0.10 +8.1 1,739,929 + CCNA_01618 0.28 +6.3 1,739,955 - CCNA_01618 0.32 +8.2 1,739,965 - CCNA_01618 0.33 +5.6 1,740,014 - CCNA_01618 0.41 +4.9 1,740,022 + CCNA_01618 0.42 +4.2 1,740,066 + CCNA_01618 0.48 +5.3 1,740,066 + CCNA_01618 0.48 +0.3 1,740,074 - CCNA_01618 0.50 +6.1 1,740,122 - CCNA_01618 0.57 +6.4 1,740,156 + CCNA_01618 0.62 +3.8 1,740,164 - CCNA_01618 0.63 +5.3 1,740,164 - CCNA_01618 0.63 +6.3 1,740,164 - CCNA_01618 0.63 +5.9 1,740,274 + CCNA_01618 0.79 +5.4 1,740,297 + CCNA_01618 0.82 +5.7 1,740,297 + CCNA_01618 0.82 +5.4 1,740,353 + +7.0 1,740,354 - +7.0 1,740,411 + -1.9 1,740,411 + -0.7 1,740,413 - +1.3 1,740,416 + +2.7 1,740,419 - -0.8 1,740,421 + -0.3 1,740,421 + -1.2 1,740,424 - +0.9 1,740,426 + +1.9 1,740,458 - -0.5 1,740,460 + +0.5 1,740,468 - -2.0 1,740,616 + CCNA_01619 0.33 -1.4 1,740,626 + CCNA_01619 0.35 -1.4 1,740,626 + CCNA_01619 0.35 -1.0 1,740,634 - CCNA_01619 0.36 -3.4 1,740,634 - CCNA_01619 0.36 -1.5 1,740,634 - +2.9 1,740,634 - CCNA_01619 0.36 +0.1 1,740,634 - CCNA_01619 0.36 +0.3 1,740,696 + CCNA_01619 0.47 +1.3 1,740,702 - CCNA_01619 0.48 -0.5 1,740,727 - CCNA_01619 0.52 -0.5 1,740,779 + CCNA_01619 0.60 -1.0 1,740,789 + CCNA_01619 0.62 +1.3 1,740,797 - CCNA_01619 0.63 -1.6 1,740,797 - CCNA_01619 0.63 +0.6 1,740,804 + CCNA_01619 0.65 -0.1 1,740,820 - CCNA_01619 0.67 -0.7 1,740,876 - CCNA_01619 0.77 +0.7 1,740,888 - CCNA_01619 0.79 -0.9 1,740,915 + CCNA_01619 0.83 -0.2 1,740,915 + CCNA_01619 0.83 +0.4 1,740,915 + CCNA_01619 0.83 +0.6 1,740,923 - CCNA_01619 0.85 -1.4 1,740,956 + -1.5 1,740,956 + -0.0 1,740,956 + -0.7 1,740,964 - -0.1 1,740,964 - -0.2 1,740,964 - -1.0 1,740,964 - -0.8 1,740,964 - +1.9 1,740,984 + -0.7 1,740,992 - -0.4 1,740,992 - +0.4 1,741,009 + -0.7
Or see this region's nucleotide sequence