Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00673

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00672 and CCNA_00673 are separated by 87 nucleotidesCCNA_00673 and CCNA_00674 are separated by 98 nucleotides CCNA_00672: CCNA_00672 - hypothetical protein, at 729,890 to 730,693 _00672 CCNA_00673: CCNA_00673 - AraC-family transcriptional regulator, at 730,781 to 731,788 _00673 CCNA_00674: CCNA_00674 - NAD(FAD)-utilizing dehydrogenase, at 731,887 to 733,134 _00674 Position (kb) 730 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 729.782 kb on + strandat 729.782 kb on + strandat 729.782 kb on + strandat 729.799 kb on + strandat 729.807 kb on - strandat 729.817 kb on - strandat 729.837 kb on - strandat 729.837 kb on - strandat 729.850 kb on + strandat 729.855 kb on + strandat 729.922 kb on + strandat 729.926 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.927 kb on + strandat 729.933 kb on + strandat 729.935 kb on - strandat 729.941 kb on - strandat 729.963 kb on - strandat 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.981 kb on + strand, within CCNA_00672at 729.989 kb on - strand, within CCNA_00672at 730.001 kb on - strand, within CCNA_00672at 730.001 kb on - strand, within CCNA_00672at 730.008 kb on + strand, within CCNA_00672at 730.016 kb on - strand, within CCNA_00672at 730.019 kb on - strand, within CCNA_00672at 730.053 kb on - strand, within CCNA_00672at 730.063 kb on + strand, within CCNA_00672at 730.063 kb on + strand, within CCNA_00672at 730.066 kb on - strand, within CCNA_00672at 730.085 kb on - strand, within CCNA_00672at 730.085 kb on - strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.104 kb on + strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.112 kb on - strand, within CCNA_00672at 730.184 kb on + strand, within CCNA_00672at 730.192 kb on + strand, within CCNA_00672at 730.192 kb on - strand, within CCNA_00672at 730.227 kb on + strand, within CCNA_00672at 730.227 kb on + strand, within CCNA_00672at 730.252 kb on - strand, within CCNA_00672at 730.262 kb on + strand, within CCNA_00672at 730.272 kb on + strand, within CCNA_00672at 730.285 kb on - strand, within CCNA_00672at 730.393 kb on - strand, within CCNA_00672at 730.395 kb on + strand, within CCNA_00672at 730.427 kb on + strand, within CCNA_00672at 730.442 kb on - strand, within CCNA_00672at 730.481 kb on + strand, within CCNA_00672at 730.482 kb on + strand, within CCNA_00672at 730.498 kb on + strand, within CCNA_00672at 730.505 kb on + strand, within CCNA_00672at 730.523 kb on - strand, within CCNA_00672at 730.532 kb on - strand, within CCNA_00672at 730.551 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.556 kb on + strand, within CCNA_00672at 730.559 kb on - strand, within CCNA_00672at 730.564 kb on - strand, within CCNA_00672at 730.584 kb on - strand, within CCNA_00672at 730.599 kb on + strandat 730.613 kb on - strandat 730.652 kb on + strandat 730.660 kb on - strandat 730.666 kb on - strandat 730.743 kb on - strandat 730.763 kb on + strandat 730.765 kb on + strandat 730.786 kb on - strandat 730.787 kb on + strandat 730.788 kb on - strandat 730.835 kb on + strandat 730.843 kb on - strandat 730.843 kb on - strandat 730.872 kb on + strandat 730.873 kb on + strandat 730.902 kb on + strand, within CCNA_00673at 730.929 kb on + strand, within CCNA_00673at 730.937 kb on - strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.952 kb on + strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.960 kb on - strand, within CCNA_00673at 730.961 kb on - strand, within CCNA_00673at 731.007 kb on + strand, within CCNA_00673at 731.025 kb on - strand, within CCNA_00673at 731.067 kb on + strand, within CCNA_00673at 731.081 kb on - strand, within CCNA_00673at 731.116 kb on + strand, within CCNA_00673at 731.124 kb on - strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.188 kb on + strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.196 kb on - strand, within CCNA_00673at 731.197 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.207 kb on - strand, within CCNA_00673at 731.209 kb on + strand, within CCNA_00673at 731.219 kb on + strand, within CCNA_00673at 731.233 kb on + strand, within CCNA_00673at 731.279 kb on - strand, within CCNA_00673at 731.315 kb on + strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.347 kb on - strand, within CCNA_00673at 731.349 kb on + strand, within CCNA_00673at 731.367 kb on - strand, within CCNA_00673at 731.424 kb on - strand, within CCNA_00673at 731.482 kb on - strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.497 kb on + strand, within CCNA_00673at 731.561 kb on + strand, within CCNA_00673at 731.577 kb on + strand, within CCNA_00673at 731.585 kb on - strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.596 kb on + strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.604 kb on - strand, within CCNA_00673at 731.616 kb on - strand, within CCNA_00673at 731.617 kb on - strand, within CCNA_00673at 731.622 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.627 kb on + strand, within CCNA_00673at 731.654 kb on + strand, within CCNA_00673at 731.662 kb on - strand, within CCNA_00673at 731.698 kb on + strandat 731.750 kb on - strandat 731.750 kb on - strandat 731.754 kb on + strandat 731.762 kb on - strandat 731.764 kb on - strandat 731.774 kb on - strandat 731.776 kb on + strandat 731.786 kb on - strandat 731.884 kb on + strandat 731.892 kb on - strandat 731.897 kb on - strandat 731.949 kb on - strandat 731.972 kb on + strandat 731.972 kb on + strandat 731.972 kb on + strandat 732.029 kb on - strand, within CCNA_00674at 732.092 kb on - strand, within CCNA_00674at 732.097 kb on - strand, within CCNA_00674at 732.113 kb on + strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.121 kb on - strand, within CCNA_00674at 732.153 kb on + strand, within CCNA_00674at 732.161 kb on - strand, within CCNA_00674at 732.162 kb on - strand, within CCNA_00674at 732.240 kb on - strand, within CCNA_00674at 732.305 kb on - strand, within CCNA_00674at 732.317 kb on - strand, within CCNA_00674at 732.352 kb on - strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.355 kb on + strand, within CCNA_00674at 732.388 kb on + strand, within CCNA_00674at 732.440 kb on - strand, within CCNA_00674at 732.512 kb on + strand, within CCNA_00674at 732.536 kb on - strand, within CCNA_00674at 732.574 kb on + strand, within CCNA_00674at 732.580 kb on - strand, within CCNA_00674at 732.586 kb on - strand, within CCNA_00674at 732.611 kb on - strand, within CCNA_00674at 732.642 kb on + strand, within CCNA_00674at 732.656 kb on - strand, within CCNA_00674at 732.676 kb on + strand, within CCNA_00674at 732.685 kb on + strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.693 kb on - strand, within CCNA_00674at 732.721 kb on - strand, within CCNA_00674at 732.723 kb on - strand, within CCNA_00674at 732.756 kb on - strand, within CCNA_00674

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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729,782 + +0.2
729,782 + +0.5
729,782 + +0.8
729,799 + +0.2
729,807 - -0.2
729,817 - +0.8
729,837 - -0.2
729,837 - +0.2
729,850 + +2.8
729,855 + -0.1
729,922 + +1.0
729,926 + -1.0
729,927 + +2.8
729,927 + -1.1
729,927 + +0.5
729,933 + -1.2
729,935 - +0.8
729,941 - +1.2
729,963 - -0.0
729,981 + CCNA_00672 0.11 +0.5
729,981 + CCNA_00672 0.11 +0.1
729,981 + CCNA_00672 0.11 -0.5
729,989 - CCNA_00672 0.12 +0.2
730,001 - CCNA_00672 0.14 -0.7
730,001 - CCNA_00672 0.14 +1.2
730,008 + CCNA_00672 0.15 -2.2
730,016 - CCNA_00672 0.16 +0.5
730,019 - CCNA_00672 0.16 +0.2
730,053 - CCNA_00672 0.20 -0.7
730,063 + CCNA_00672 0.22 -0.8
730,063 + CCNA_00672 0.22 +3.7
730,066 - CCNA_00672 0.22 +0.5
730,085 - CCNA_00672 0.24 -0.5
730,085 - CCNA_00672 0.24 -1.2
730,104 + CCNA_00672 0.27 -1.0
730,104 + CCNA_00672 0.27 +2.8
730,104 + CCNA_00672 0.27 +0.5
730,104 + CCNA_00672 0.27 -1.8
730,104 + CCNA_00672 0.27 +0.0
730,104 + CCNA_00672 0.27 +0.5
730,104 + CCNA_00672 0.27 -1.6
730,104 + CCNA_00672 0.27 -0.1
730,112 - CCNA_00672 0.28 -1.6
730,112 - CCNA_00672 0.28 +0.8
730,184 + CCNA_00672 0.37 +0.2
730,192 + CCNA_00672 0.38 -0.1
730,192 - CCNA_00672 0.38 -0.9
730,227 + CCNA_00672 0.42 -0.4
730,227 + CCNA_00672 0.42 -0.5
730,252 - CCNA_00672 0.45 -0.0
730,262 + CCNA_00672 0.46 -1.0
730,272 + CCNA_00672 0.48 +1.8
730,285 - CCNA_00672 0.49 -1.1
730,393 - CCNA_00672 0.63 +1.2
730,395 + CCNA_00672 0.63 -0.5
730,427 + CCNA_00672 0.67 -0.4
730,442 - CCNA_00672 0.69 -1.7
730,481 + CCNA_00672 0.74 +1.2
730,482 + CCNA_00672 0.74 -1.1
730,498 + CCNA_00672 0.76 -0.0
730,505 + CCNA_00672 0.76 +0.8
730,523 - CCNA_00672 0.79 -2.2
730,532 - CCNA_00672 0.80 -2.0
730,551 + CCNA_00672 0.82 -0.0
730,556 + CCNA_00672 0.83 +0.6
730,556 + CCNA_00672 0.83 -0.0
730,556 + CCNA_00672 0.83 +1.2
730,559 - CCNA_00672 0.83 +1.2
730,564 - CCNA_00672 0.84 -2.4
730,584 - CCNA_00672 0.86 -1.0
730,599 + +2.8
730,613 - -1.6
730,652 + -0.5
730,660 - -1.7
730,666 - +0.2
730,743 - -0.9
730,763 + +1.2
730,765 + +1.2
730,786 - -0.2
730,787 + -1.7
730,788 - +0.8
730,835 + +1.2
730,843 - -0.0
730,843 - -0.9
730,872 + +0.9
730,873 + +1.2
730,902 + CCNA_00673 0.12 +0.1
730,929 + CCNA_00673 0.15 -0.7
730,937 - CCNA_00673 0.15 +0.8
730,952 + CCNA_00673 0.17 +1.8
730,952 + CCNA_00673 0.17 -0.4
730,952 + CCNA_00673 0.17 +1.2
730,952 + CCNA_00673 0.17 +1.8
730,952 + CCNA_00673 0.17 -0.2
730,960 - CCNA_00673 0.18 -0.2
730,960 - CCNA_00673 0.18 -0.4
730,960 - CCNA_00673 0.18 +1.2
730,960 - CCNA_00673 0.18 -0.2
730,960 - CCNA_00673 0.18 +0.2
730,960 - CCNA_00673 0.18 +1.2
730,960 - CCNA_00673 0.18 -0.4
730,960 - CCNA_00673 0.18 -1.4
730,961 - CCNA_00673 0.18 -0.0
731,007 + CCNA_00673 0.22 +0.5
731,025 - CCNA_00673 0.24 -0.8
731,067 + CCNA_00673 0.28 -0.0
731,081 - CCNA_00673 0.30 -0.7
731,116 + CCNA_00673 0.33 -0.8
731,124 - CCNA_00673 0.34 -0.2
731,188 + CCNA_00673 0.40 -1.1
731,188 + CCNA_00673 0.40 +1.2
731,196 - CCNA_00673 0.41 -0.0
731,196 - CCNA_00673 0.41 +0.6
731,197 - CCNA_00673 0.41 -0.8
731,207 - CCNA_00673 0.42 +1.2
731,207 - CCNA_00673 0.42 +0.2
731,209 + CCNA_00673 0.42 -0.4
731,219 + CCNA_00673 0.43 -0.5
731,233 + CCNA_00673 0.45 -0.8
731,279 - CCNA_00673 0.49 -0.5
731,315 + CCNA_00673 0.53 -0.3
731,347 - CCNA_00673 0.56 -0.0
731,347 - CCNA_00673 0.56 -0.5
731,349 + CCNA_00673 0.56 +1.8
731,367 - CCNA_00673 0.58 -0.4
731,424 - CCNA_00673 0.64 -0.8
731,482 - CCNA_00673 0.70 +1.8
731,497 + CCNA_00673 0.71 -0.0
731,497 + CCNA_00673 0.71 -0.0
731,497 + CCNA_00673 0.71 -1.6
731,497 + CCNA_00673 0.71 -0.5
731,561 + CCNA_00673 0.77 -1.3
731,577 + CCNA_00673 0.79 -0.3
731,585 - CCNA_00673 0.80 +0.8
731,596 + CCNA_00673 0.81 -0.8
731,596 + CCNA_00673 0.81 +2.8
731,596 + CCNA_00673 0.81 +0.4
731,596 + CCNA_00673 0.81 +0.5
731,596 + CCNA_00673 0.81 -0.7
731,604 - CCNA_00673 0.82 +1.8
731,604 - CCNA_00673 0.82 +0.4
731,604 - CCNA_00673 0.82 -1.4
731,604 - CCNA_00673 0.82 -1.0
731,604 - CCNA_00673 0.82 -1.7
731,604 - CCNA_00673 0.82 -1.2
731,604 - CCNA_00673 0.82 -1.1
731,616 - CCNA_00673 0.83 +3.4
731,617 - CCNA_00673 0.83 -1.9
731,622 + CCNA_00673 0.83 -0.2
731,627 + CCNA_00673 0.84 -2.0
731,627 + CCNA_00673 0.84 -1.2
731,654 + CCNA_00673 0.87 -2.1
731,662 - CCNA_00673 0.87 +0.4
731,698 + -1.5
731,750 - -1.4
731,750 - -0.0
731,754 + -0.8
731,762 - +2.8
731,764 - -0.8
731,774 - -2.0
731,776 + +0.7
731,786 - +1.0
731,884 + +0.1
731,892 - +0.9
731,897 - -2.1
731,949 - +0.5
731,972 + -2.0
731,972 + -1.1
731,972 + -1.6
732,029 - CCNA_00674 0.11 +1.1
732,092 - CCNA_00674 0.16 +3.8
732,097 - CCNA_00674 0.17 +0.3
732,113 + CCNA_00674 0.18 -0.4
732,121 - CCNA_00674 0.19 -2.1
732,121 - CCNA_00674 0.19 -0.5
732,153 + CCNA_00674 0.21 -0.7
732,161 - CCNA_00674 0.22 -0.3
732,162 - CCNA_00674 0.22 -0.7
732,240 - CCNA_00674 0.28 -0.3
732,305 - CCNA_00674 0.33 +0.5
732,317 - CCNA_00674 0.34 -0.5
732,352 - CCNA_00674 0.37 -1.2
732,355 + CCNA_00674 0.38 +3.5
732,355 + CCNA_00674 0.38 -2.4
732,355 + CCNA_00674 0.38 -0.4
732,388 + CCNA_00674 0.40 -0.0
732,440 - CCNA_00674 0.44 -1.9
732,512 + CCNA_00674 0.50 -3.3
732,536 - CCNA_00674 0.52 -0.4
732,574 + CCNA_00674 0.55 -2.2
732,580 - CCNA_00674 0.56 +2.0
732,586 - CCNA_00674 0.56 -1.3
732,611 - CCNA_00674 0.58 +1.8
732,642 + CCNA_00674 0.60 -0.3
732,656 - CCNA_00674 0.62 +1.0
732,676 + CCNA_00674 0.63 -0.1
732,685 + CCNA_00674 0.64 -0.5
732,693 - CCNA_00674 0.65 +1.2
732,693 - CCNA_00674 0.65 +0.0
732,721 - CCNA_00674 0.67 +2.5
732,723 - CCNA_00674 0.67 +0.2
732,756 - CCNA_00674 0.70 -1.9

Or see this region's nucleotide sequence