Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00367

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00366 and CCNA_00367 overlap by 4 nucleotidesCCNA_00367 and CCNA_00368 are separated by 5 nucleotidesCCNA_00368 and CCNA_00369 are separated by 149 nucleotides CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803 _00366 CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825 _00367 CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667 _00368 CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130 _00369 Position (kb) 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 382.801 kb on - strandat 382.802 kb on - strandat 382.841 kb on + strandat 382.841 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.915 kb on - strandat 382.932 kb on + strandat 382.984 kb on - strandat 382.988 kb on + strandat 383.008 kb on - strandat 383.014 kb on + strandat 383.127 kb on + strand, within CCNA_00366at 383.145 kb on - strand, within CCNA_00366at 383.150 kb on + strand, within CCNA_00366at 383.163 kb on - strand, within CCNA_00366at 383.178 kb on + strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.230 kb on - strand, within CCNA_00366at 383.274 kb on - strand, within CCNA_00366at 383.292 kb on + strand, within CCNA_00366at 383.300 kb on - strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.353 kb on + strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.363 kb on + strand, within CCNA_00366at 383.365 kb on - strand, within CCNA_00366at 383.372 kb on + strand, within CCNA_00366at 383.406 kb on + strandat 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.427 kb on + strand, within CCNA_00366at 383.460 kb on + strand, within CCNA_00366at 383.491 kb on - strand, within CCNA_00366at 383.493 kb on + strand, within CCNA_00366at 383.495 kb on + strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.521 kb on + strand, within CCNA_00366at 383.546 kb on + strand, within CCNA_00366at 383.582 kb on + strand, within CCNA_00366at 383.590 kb on - strand, within CCNA_00366at 383.605 kb on + strand, within CCNA_00366at 383.618 kb on + strand, within CCNA_00366at 383.626 kb on - strand, within CCNA_00366at 383.636 kb on + strand, within CCNA_00366at 383.639 kb on - strand, within CCNA_00366at 383.644 kb on + strand, within CCNA_00366at 383.644 kb on - strand, within CCNA_00366at 383.650 kb on + strand, within CCNA_00366at 383.658 kb on - strand, within CCNA_00366at 383.658 kb on - strand, within CCNA_00366at 383.660 kb on - strand, within CCNA_00366at 383.662 kb on + strand, within CCNA_00366at 383.667 kb on + strand, within CCNA_00366at 383.675 kb on - strand, within CCNA_00366at 383.675 kb on - strand, within CCNA_00366at 383.686 kb on + strand, within CCNA_00366at 383.692 kb on - strand, within CCNA_00366at 383.704 kb on + strand, within CCNA_00366at 383.705 kb on + strand, within CCNA_00366at 383.705 kb on + strand, within CCNA_00366at 383.713 kb on - strand, within CCNA_00366at 383.760 kb on + strandat 383.787 kb on - strandat 383.829 kb on - strandat 383.839 kb on + strandat 383.845 kb on + strandat 383.845 kb on + strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.853 kb on - strandat 383.864 kb on + strandat 383.869 kb on + strandat 383.869 kb on + strandat 383.877 kb on - strandat 383.922 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.948 kb on - strand, within CCNA_00367at 383.959 kb on - strand, within CCNA_00367at 383.971 kb on - strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.990 kb on + strand, within CCNA_00367at 383.998 kb on - strand, within CCNA_00367at 384.004 kb on + strand, within CCNA_00367at 384.033 kb on + strand, within CCNA_00367at 384.041 kb on - strand, within CCNA_00367at 384.047 kb on + strand, within CCNA_00367at 384.061 kb on + strand, within CCNA_00367at 384.069 kb on - strand, within CCNA_00367at 384.121 kb on + strand, within CCNA_00367at 384.165 kb on - strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.205 kb on + strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.213 kb on - strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.214 kb on + strand, within CCNA_00367at 384.275 kb on + strand, within CCNA_00367at 384.283 kb on + strand, within CCNA_00367at 384.290 kb on + strand, within CCNA_00367at 384.295 kb on + strand, within CCNA_00367at 384.298 kb on - strand, within CCNA_00367at 384.303 kb on - strand, within CCNA_00367at 384.342 kb on + strand, within CCNA_00367at 384.354 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.390 kb on + strand, within CCNA_00367at 384.403 kb on + strand, within CCNA_00367at 384.416 kb on - strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.429 kb on + strand, within CCNA_00367at 384.432 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.437 kb on - strand, within CCNA_00367at 384.492 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.507 kb on + strand, within CCNA_00367at 384.515 kb on - strand, within CCNA_00367at 384.566 kb on + strand, within CCNA_00367at 384.574 kb on - strand, within CCNA_00367at 384.576 kb on + strand, within CCNA_00367at 384.579 kb on - strand, within CCNA_00367at 384.606 kb on + strand, within CCNA_00367at 384.611 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.635 kb on + strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.670 kb on - strand, within CCNA_00367at 384.708 kb on - strand, within CCNA_00367at 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.726 kb on + strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.734 kb on - strandat 384.759 kb on - strandat 384.767 kb on + strandat 384.770 kb on - strandat 384.784 kb on + strandat 384.851 kb on + strandat 384.889 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.894 kb on + strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.902 kb on - strandat 384.909 kb on + strandat 384.910 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.925 kb on + strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.933 kb on - strand, within CCNA_00368at 384.950 kb on + strand, within CCNA_00368at 384.974 kb on - strand, within CCNA_00368at 385.010 kb on + strand, within CCNA_00368at 385.020 kb on + strand, within CCNA_00368at 385.055 kb on + strand, within CCNA_00368at 385.077 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.141 kb on - strand, within CCNA_00368at 385.182 kb on + strand, within CCNA_00368at 385.216 kb on + strand, within CCNA_00368at 385.224 kb on - strand, within CCNA_00368at 385.229 kb on - strand, within CCNA_00368at 385.254 kb on + strand, within CCNA_00368at 385.277 kb on + strand, within CCNA_00368at 385.279 kb on + strand, within CCNA_00368at 385.313 kb on + strand, within CCNA_00368at 385.334 kb on + strand, within CCNA_00368at 385.415 kb on + strand, within CCNA_00368at 385.419 kb on - strand, within CCNA_00368at 385.423 kb on - strand, within CCNA_00368at 385.424 kb on + strand, within CCNA_00368at 385.449 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.465 kb on + strand, within CCNA_00368at 385.470 kb on + strand, within CCNA_00368at 385.478 kb on - strand, within CCNA_00368at 385.488 kb on + strand, within CCNA_00368at 385.509 kb on + strand, within CCNA_00368at 385.517 kb on - strand, within CCNA_00368at 385.539 kb on + strand, within CCNA_00368at 385.604 kb on - strandat 385.643 kb on + strandat 385.645 kb on - strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.656 kb on + strandat 385.661 kb on + strandat 385.661 kb on + strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.664 kb on - strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.666 kb on + strandat 385.714 kb on + strandat 385.721 kb on - strandat 385.721 kb on - strandat 385.757 kb on + strandat 385.760 kb on + strandat 385.798 kb on + strandat 385.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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382,801 - +0.5
382,802 - +0.3
382,841 + -1.1
382,841 + -0.4
382,898 + +1.1
382,898 + -0.5
382,898 + -1.3
382,906 - +1.1
382,906 - +0.1
382,906 - -0.8
382,906 - +1.6
382,906 - +2.6
382,906 - +1.6
382,906 - +0.1
382,915 - +2.2
382,932 + +1.8
382,984 - +5.2
382,988 + +9.1
383,008 - +7.3
383,014 + +8.9
383,127 + CCNA_00366 0.15 +9.3
383,145 - CCNA_00366 0.17 +6.7
383,150 + CCNA_00366 0.18 +9.5
383,163 - CCNA_00366 0.19 +6.9
383,178 + CCNA_00366 0.21 +9.4
383,179 - CCNA_00366 0.21 +7.3
383,179 - CCNA_00366 0.21 +9.1
383,186 - CCNA_00366 0.22 +9.2
383,186 - CCNA_00366 0.22 +8.3
383,222 + CCNA_00366 0.27 +9.0
383,222 + CCNA_00366 0.27 +11.1
383,222 + CCNA_00366 0.27 +9.0
383,222 + CCNA_00366 0.27 +8.4
383,230 - CCNA_00366 0.28 +8.5
383,274 - CCNA_00366 0.33 +8.8
383,292 + CCNA_00366 0.36 +10.1
383,300 - CCNA_00366 0.37 +8.2
383,320 + CCNA_00366 0.39 +9.4
383,320 + CCNA_00366 0.39 +9.2
383,353 + CCNA_00366 0.43 +9.0
383,361 - CCNA_00366 0.44 +8.6
383,361 - CCNA_00366 0.44 +9.1
383,363 + CCNA_00366 0.45 +8.6
383,365 - CCNA_00366 0.45 +6.5
383,372 + CCNA_00366 0.46 +8.8
383,406 + +7.9
383,417 + CCNA_00366 0.51 +9.8
383,417 + CCNA_00366 0.51 +9.0
383,417 + CCNA_00366 0.51 +9.4
383,417 + CCNA_00366 0.51 +9.2
383,427 + CCNA_00366 0.53 +9.0
383,460 + CCNA_00366 0.57 +8.7
383,491 - CCNA_00366 0.61 +7.0
383,493 + CCNA_00366 0.61 +9.4
383,495 + CCNA_00366 0.61 +8.9
383,520 - CCNA_00366 0.64 +8.7
383,520 - CCNA_00366 0.64 +8.3
383,521 + CCNA_00366 0.64 +8.2
383,546 + CCNA_00366 0.68 +7.7
383,582 + CCNA_00366 0.72 +9.3
383,590 - CCNA_00366 0.73 +8.1
383,605 + CCNA_00366 0.75 +8.7
383,618 + CCNA_00366 0.77 +8.6
383,626 - CCNA_00366 0.78 +8.0
383,636 + CCNA_00366 0.79 +8.8
383,639 - CCNA_00366 0.79 +7.1
383,644 + CCNA_00366 0.80 +9.7
383,644 - CCNA_00366 0.80 +8.2
383,650 + CCNA_00366 0.81 +9.3
383,658 - CCNA_00366 0.82 +8.3
383,658 - CCNA_00366 0.82 +6.8
383,660 - CCNA_00366 0.82 +8.4
383,662 + CCNA_00366 0.82 +9.7
383,667 + CCNA_00366 0.83 +9.5
383,675 - CCNA_00366 0.84 +7.7
383,675 - CCNA_00366 0.84 +8.3
383,686 + CCNA_00366 0.85 +9.1
383,692 - CCNA_00366 0.86 +6.2
383,704 + CCNA_00366 0.87 +8.7
383,705 + CCNA_00366 0.88 +9.6
383,705 + CCNA_00366 0.88 +8.3
383,713 - CCNA_00366 0.89 +9.4
383,760 + +10.1
383,787 - +8.8
383,829 - +7.4
383,839 + +10.3
383,845 + +8.4
383,845 + +9.0
383,853 - +8.1
383,853 - +8.9
383,853 - +8.1
383,864 + +8.8
383,869 + +9.5
383,869 + +9.7
383,877 - +7.7
383,922 - CCNA_00367 0.12 +8.3
383,948 - CCNA_00367 0.14 +8.2
383,948 - CCNA_00367 0.14 +8.5
383,959 - CCNA_00367 0.15 +8.7
383,971 - CCNA_00367 0.17 +6.4
383,990 + CCNA_00367 0.19 +9.0
383,990 + CCNA_00367 0.19 +7.4
383,998 - CCNA_00367 0.19 +9.7
384,004 + CCNA_00367 0.20 +8.5
384,033 + CCNA_00367 0.23 +10.3
384,041 - CCNA_00367 0.23 +8.7
384,047 + CCNA_00367 0.24 +9.0
384,061 + CCNA_00367 0.25 +9.0
384,069 - CCNA_00367 0.26 +7.1
384,121 + CCNA_00367 0.31 +8.6
384,165 - CCNA_00367 0.36 +5.5
384,205 + CCNA_00367 0.39 +9.5
384,205 + CCNA_00367 0.39 +9.6
384,205 + CCNA_00367 0.39 +9.5
384,205 + CCNA_00367 0.39 +9.7
384,205 + CCNA_00367 0.39 +8.9
384,205 + CCNA_00367 0.39 +7.9
384,205 + CCNA_00367 0.39 +9.2
384,213 - CCNA_00367 0.40 +7.3
384,213 - CCNA_00367 0.40 +6.0
384,213 - CCNA_00367 0.40 +7.1
384,213 - CCNA_00367 0.40 +6.9
384,213 - CCNA_00367 0.40 +6.5
384,213 - CCNA_00367 0.40 +6.8
384,213 - CCNA_00367 0.40 +7.5
384,214 + CCNA_00367 0.40 +9.3
384,214 + CCNA_00367 0.40 +8.9
384,275 + CCNA_00367 0.46 +8.2
384,283 + CCNA_00367 0.47 +8.6
384,290 + CCNA_00367 0.48 +9.2
384,295 + CCNA_00367 0.48 +9.6
384,298 - CCNA_00367 0.49 +9.4
384,303 - CCNA_00367 0.49 +9.2
384,342 + CCNA_00367 0.53 +9.3
384,354 + CCNA_00367 0.54 +8.0
384,390 + CCNA_00367 0.58 +9.1
384,390 + CCNA_00367 0.58 +9.9
384,403 + CCNA_00367 0.59 +8.7
384,416 - CCNA_00367 0.60 +7.1
384,429 + CCNA_00367 0.61 +9.0
384,429 + CCNA_00367 0.61 +9.3
384,432 - CCNA_00367 0.62 +8.3
384,437 - CCNA_00367 0.62 +8.3
384,437 - CCNA_00367 0.62 +8.9
384,492 + CCNA_00367 0.67 +9.3
384,507 + CCNA_00367 0.69 +9.1
384,507 + CCNA_00367 0.69 +9.9
384,515 - CCNA_00367 0.70 +8.5
384,566 + CCNA_00367 0.75 +8.7
384,574 - CCNA_00367 0.75 +9.1
384,576 + CCNA_00367 0.76 +9.2
384,579 - CCNA_00367 0.76 +8.4
384,606 + CCNA_00367 0.79 +9.6
384,611 + CCNA_00367 0.79 +9.0
384,635 + CCNA_00367 0.81 +9.2
384,635 + CCNA_00367 0.81 +9.0
384,670 - CCNA_00367 0.85 +7.9
384,670 - CCNA_00367 0.85 +9.2
384,708 - CCNA_00367 0.88 +8.6
384,726 + +9.6
384,726 + +9.3
384,726 + +8.8
384,726 + +9.7
384,726 + +9.2
384,726 + +8.9
384,726 + +9.2
384,726 + +9.6
384,726 + +9.6
384,734 - +8.5
384,734 - +9.8
384,734 - +8.5
384,734 - +8.7
384,734 - +9.1
384,734 - +7.3
384,759 - +8.6
384,767 + +8.1
384,770 - +8.5
384,784 + +9.4
384,851 + +9.2
384,889 + +8.8
384,894 + +9.2
384,894 + +9.4
384,894 + +9.0
384,894 + +9.2
384,902 - +9.4
384,902 - +8.0
384,902 - +7.9
384,902 - +9.5
384,902 - +8.0
384,909 + +9.2
384,910 + +9.1
384,914 + +9.6
384,914 + +9.0
384,925 + CCNA_00368 0.11 +9.2
384,933 - CCNA_00368 0.12 +7.2
384,933 - CCNA_00368 0.12 +7.6
384,950 + CCNA_00368 0.14 +9.5
384,974 - CCNA_00368 0.17 +7.1
385,010 + CCNA_00368 0.21 +9.4
385,020 + CCNA_00368 0.23 +9.3
385,055 + CCNA_00368 0.27 +9.2
385,077 - CCNA_00368 0.29 +8.6
385,141 - CCNA_00368 0.37 +8.9
385,141 - CCNA_00368 0.37 +8.2
385,182 + CCNA_00368 0.42 +8.9
385,216 + CCNA_00368 0.46 +9.9
385,224 - CCNA_00368 0.47 +10.0
385,229 - CCNA_00368 0.48 +8.6
385,254 + CCNA_00368 0.51 +9.2
385,277 + CCNA_00368 0.53 +9.5
385,279 + CCNA_00368 0.54 +9.2
385,313 + CCNA_00368 0.58 +9.5
385,334 + CCNA_00368 0.60 +9.4
385,415 + CCNA_00368 0.70 +8.6
385,419 - CCNA_00368 0.70 +6.9
385,423 - CCNA_00368 0.71 +8.2
385,424 + CCNA_00368 0.71 +9.2
385,449 + CCNA_00368 0.74 +9.6
385,465 + CCNA_00368 0.76 +8.5
385,465 + CCNA_00368 0.76 +9.9
385,465 + CCNA_00368 0.76 +9.4
385,465 + CCNA_00368 0.76 +9.2
385,470 + CCNA_00368 0.76 +9.4
385,478 - CCNA_00368 0.77 +9.6
385,488 + CCNA_00368 0.78 +9.5
385,509 + CCNA_00368 0.81 +9.2
385,517 - CCNA_00368 0.82 +8.5
385,539 + CCNA_00368 0.85 +9.4
385,604 - +8.8
385,643 + +9.0
385,645 - +6.6
385,656 + +9.1
385,656 + +9.2
385,656 + +9.5
385,656 + +8.6
385,661 + +2.3
385,661 + +2.4
385,664 - +9.3
385,664 - +7.8
385,664 - +9.1
385,666 + +2.4
385,666 + +2.0
385,666 + +1.6
385,666 + +1.0
385,666 + +2.1
385,666 + +1.1
385,714 + +1.7
385,721 - +0.8
385,721 - +3.4
385,757 + -1.3
385,760 + -3.5
385,798 + -0.4
385,814 + +0.1

Or see this region's nucleotide sequence