Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00163

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00162 and CCNA_00163 are separated by 46 nucleotidesCCNA_00163 and CCNA_00164 overlap by 11 nucleotides CCNA_00162: CCNA_00162 - hypothetical protein, at 171,649 to 172,917 _00162 CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 Position (kb) 172 173 174 175 176Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 171.982 kb on - strand, within CCNA_00162at 172.024 kb on + strand, within CCNA_00162at 172.058 kb on + strand, within CCNA_00162at 172.068 kb on + strand, within CCNA_00162at 172.073 kb on + strand, within CCNA_00162at 172.111 kb on + strand, within CCNA_00162at 172.236 kb on + strand, within CCNA_00162at 172.494 kb on + strand, within CCNA_00162at 172.601 kb on + strand, within CCNA_00162at 172.906 kb on + strandat 172.911 kb on + strandat 172.961 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.155 kb on + strandat 173.163 kb on - strandat 173.163 kb on - strandat 173.291 kb on - strand, within CCNA_00163at 173.332 kb on + strand, within CCNA_00163at 173.340 kb on - strand, within CCNA_00163at 173.359 kb on + strand, within CCNA_00163at 173.434 kb on - strand, within CCNA_00163at 173.457 kb on + strand, within CCNA_00163at 173.477 kb on + strand, within CCNA_00163at 173.618 kb on + strand, within CCNA_00163at 173.628 kb on + strand, within CCNA_00163at 173.658 kb on - strand, within CCNA_00163at 173.713 kb on + strand, within CCNA_00163at 173.798 kb on + strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.806 kb on - strand, within CCNA_00163at 173.835 kb on + strand, within CCNA_00163at 173.835 kb on + strand, within CCNA_00163at 173.973 kb on + strand, within CCNA_00163at 174.022 kb on + strand, within CCNA_00163at 174.103 kb on + strand, within CCNA_00163at 174.103 kb on - strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.132 kb on + strand, within CCNA_00163at 174.181 kb on + strand, within CCNA_00163at 174.211 kb on + strand, within CCNA_00163at 174.235 kb on - strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.279 kb on + strand, within CCNA_00163at 174.288 kb on + strand, within CCNA_00163at 174.322 kb on + strand, within CCNA_00163at 174.435 kb on - strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.455 kb on + strand, within CCNA_00163at 174.508 kb on + strand, within CCNA_00163at 174.528 kb on - strand, within CCNA_00163at 174.608 kb on - strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.660 kb on + strand, within CCNA_00163at 174.704 kb on - strand, within CCNA_00163at 174.783 kb on + strand, within CCNA_00163at 174.791 kb on - strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.849 kb on - strand, within CCNA_00163at 174.963 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.032 kb on - strandat 175.032 kb on - strandat 175.054 kb on + strandat 175.225 kb on + strandat 175.242 kb on + strandat 175.250 kb on - strandat 175.278 kb on - strandat 175.401 kb on + strand, within CCNA_00164at 175.416 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.654 kb on + strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.681 kb on + strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.689 kb on - strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.758 kb on - strand, within CCNA_00164at 175.826 kb on + strand, within CCNA_00164at 175.884 kb on - strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 176.014 kb on - strand, within CCNA_00164at 176.039 kb on + strand, within CCNA_00164at 176.042 kb on - strand, within CCNA_00164at 176.060 kb on - strand, within CCNA_00164at 176.068 kb on + strand, within CCNA_00164at 176.075 kb on + strand, within CCNA_00164at 176.126 kb on + strand, within CCNA_00164at 176.146 kb on + strand, within CCNA_00164at 176.175 kb on + strand, within CCNA_00164

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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171,982 - CCNA_00162 0.26 -0.1
172,024 + CCNA_00162 0.30 -3.1
172,058 + CCNA_00162 0.32 +2.2
172,068 + CCNA_00162 0.33 -1.5
172,073 + CCNA_00162 0.33 -5.3
172,111 + CCNA_00162 0.36 -3.6
172,236 + CCNA_00162 0.46 +0.2
172,494 + CCNA_00162 0.67 -2.3
172,601 + CCNA_00162 0.75 -0.6
172,906 + -2.3
172,911 + +0.5
172,961 + -2.1
173,155 + -2.3
173,155 + -2.8
173,155 + -2.4
173,155 + -2.4
173,163 - +0.6
173,163 - -2.1
173,291 - CCNA_00163 0.15 -0.7
173,332 + CCNA_00163 0.17 -3.4
173,340 - CCNA_00163 0.17 -1.0
173,359 + CCNA_00163 0.18 -2.7
173,434 - CCNA_00163 0.21 -0.6
173,457 + CCNA_00163 0.22 -2.9
173,477 + CCNA_00163 0.23 -2.8
173,618 + CCNA_00163 0.29 -3.1
173,628 + CCNA_00163 0.30 -2.7
173,658 - CCNA_00163 0.31 +0.0
173,713 + CCNA_00163 0.34 -2.5
173,798 + CCNA_00163 0.38 -3.5
173,806 - CCNA_00163 0.38 -1.5
173,806 - CCNA_00163 0.38 -0.5
173,835 + CCNA_00163 0.39 -2.5
173,835 + CCNA_00163 0.39 -3.3
173,973 + CCNA_00163 0.45 -3.7
174,022 + CCNA_00163 0.48 -1.5
174,103 + CCNA_00163 0.51 -3.5
174,103 - CCNA_00163 0.51 -0.2
174,132 + CCNA_00163 0.53 -1.0
174,132 + CCNA_00163 0.53 -2.9
174,181 + CCNA_00163 0.55 -2.7
174,211 + CCNA_00163 0.56 -2.5
174,235 - CCNA_00163 0.57 -1.1
174,269 + CCNA_00163 0.59 -2.8
174,269 + CCNA_00163 0.59 -2.2
174,279 + CCNA_00163 0.59 -2.0
174,288 + CCNA_00163 0.60 -2.3
174,322 + CCNA_00163 0.61 -1.5
174,435 - CCNA_00163 0.66 +1.0
174,437 + CCNA_00163 0.66 -0.8
174,437 + CCNA_00163 0.66 -3.6
174,437 + CCNA_00163 0.66 -1.9
174,437 + CCNA_00163 0.66 -2.5
174,445 - CCNA_00163 0.67 -1.6
174,445 - CCNA_00163 0.67 -2.1
174,455 + CCNA_00163 0.67 -3.4
174,508 + CCNA_00163 0.70 -1.7
174,528 - CCNA_00163 0.70 -0.6
174,608 - CCNA_00163 0.74 +1.0
174,660 + CCNA_00163 0.76 -3.1
174,660 + CCNA_00163 0.76 -3.3
174,704 - CCNA_00163 0.78 -1.3
174,783 + CCNA_00163 0.82 -2.4
174,791 - CCNA_00163 0.82 +0.6
174,818 + CCNA_00163 0.84 -3.3
174,818 + CCNA_00163 0.84 -2.8
174,849 - CCNA_00163 0.85 -1.4
174,963 + -4.6
175,024 + -2.5
175,024 + -0.7
175,024 + -2.6
175,032 - +0.0
175,032 - -1.5
175,054 + -1.8
175,225 + -1.5
175,242 + -1.0
175,250 - -2.0
175,278 - -2.8
175,401 + CCNA_00164 0.12 +2.3
175,416 + CCNA_00164 0.13 -0.4
175,649 + CCNA_00164 0.25 -1.0
175,649 + CCNA_00164 0.25 -1.7
175,649 + CCNA_00164 0.25 -0.1
175,649 + CCNA_00164 0.25 -1.6
175,649 + CCNA_00164 0.25 -0.5
175,654 + CCNA_00164 0.25 -1.5
175,657 - CCNA_00164 0.25 -0.2
175,657 - CCNA_00164 0.25 -0.4
175,681 + CCNA_00164 0.26 -1.1
175,686 + CCNA_00164 0.27 -1.9
175,689 - CCNA_00164 0.27 -0.6
175,694 - CCNA_00164 0.27 -1.8
175,758 - CCNA_00164 0.30 -1.8
175,826 + CCNA_00164 0.34 -0.4
175,884 - CCNA_00164 0.37 -0.5
175,918 - CCNA_00164 0.39 +0.0
175,985 + CCNA_00164 0.42 -0.8
175,985 + CCNA_00164 0.42 -0.4
175,991 + CCNA_00164 0.42 -0.6
175,999 - CCNA_00164 0.43 -0.4
176,014 - CCNA_00164 0.44 +0.3
176,039 + CCNA_00164 0.45 -1.4
176,042 - CCNA_00164 0.45 +1.0
176,060 - CCNA_00164 0.46 +0.0
176,068 + CCNA_00164 0.46 -0.1
176,075 + CCNA_00164 0.47 -2.4
176,126 + CCNA_00164 0.49 -2.9
176,146 + CCNA_00164 0.51 -1.3
176,175 + CCNA_00164 0.52 -1.0

Or see this region's nucleotide sequence