Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28420 and AO356_28425 are separated by 33 nucleotides AO356_28425 and AO356_28430 are separated by 114 nucleotides AO356_28430 and AO356_28435 are separated by 153 nucleotides AO356_28435 and AO356_28440 are separated by 15 nucleotides
AO356_28420: AO356_28420 - hypothetical protein, at 6,609,171 to 6,609,896
_28420
AO356_28425: AO356_28425 - hypothetical protein, at 6,609,930 to 6,610,556
_28425
AO356_28430: AO356_28430 - hypothetical protein, at 6,610,671 to 6,611,048
_28430
AO356_28435: AO356_28435 - SAM-dependent methyltransferase, at 6,611,202 to 6,611,897
_28435
AO356_28440: AO356_28440 - galactose 1-dehydrogenase, at 6,611,913 to 6,612,839
_28440
Position (kb)
6610
6611
6612 Strain fitness (log2 ratio)
-2
-1
0
1 at 6610.060 kb on + strand, within AO356_28425 at 6610.070 kb on - strand, within AO356_28425 at 6610.070 kb on - strand, within AO356_28425 at 6610.070 kb on - strand, within AO356_28425 at 6610.082 kb on - strand, within AO356_28425 at 6610.183 kb on + strand, within AO356_28425 at 6610.184 kb on - strand, within AO356_28425 at 6610.184 kb on - strand, within AO356_28425 at 6610.184 kb on - strand, within AO356_28425 at 6610.293 kb on + strand, within AO356_28425 at 6610.293 kb on + strand, within AO356_28425 at 6610.293 kb on + strand, within AO356_28425 at 6610.354 kb on + strand, within AO356_28425 at 6610.354 kb on + strand, within AO356_28425 at 6610.423 kb on + strand, within AO356_28425 at 6610.571 kb on + strand at 6610.572 kb on - strand at 6610.801 kb on - strand, within AO356_28430 at 6610.906 kb on - strand, within AO356_28430 at 6610.965 kb on + strand, within AO356_28430 at 6610.989 kb on - strand, within AO356_28430 at 6611.018 kb on + strand at 6611.018 kb on + strand at 6611.019 kb on - strand at 6611.380 kb on + strand, within AO356_28435 at 6611.380 kb on + strand, within AO356_28435 at 6611.398 kb on + strand, within AO356_28435 at 6611.441 kb on - strand, within AO356_28435 at 6611.849 kb on + strand at 6612.034 kb on + strand, within AO356_28440
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 6,610,060 + AO356_28425 0.21 -2.4 6,610,070 - AO356_28425 0.22 -0.6 6,610,070 - AO356_28425 0.22 -0.4 6,610,070 - AO356_28425 0.22 -0.8 6,610,082 - AO356_28425 0.24 -0.5 6,610,183 + AO356_28425 0.40 +0.5 6,610,184 - AO356_28425 0.41 +0.8 6,610,184 - AO356_28425 0.41 -0.1 6,610,184 - AO356_28425 0.41 -0.6 6,610,293 + AO356_28425 0.58 +0.0 6,610,293 + AO356_28425 0.58 +0.4 6,610,293 + AO356_28425 0.58 +0.5 6,610,354 + AO356_28425 0.68 -2.0 6,610,354 + AO356_28425 0.68 +0.1 6,610,423 + AO356_28425 0.79 -0.4 6,610,571 + +0.4 6,610,572 - -0.5 6,610,801 - AO356_28430 0.34 -0.9 6,610,906 - AO356_28430 0.62 -0.3 6,610,965 + AO356_28430 0.78 +0.1 6,610,989 - AO356_28430 0.84 +0.3 6,611,018 + -0.0 6,611,018 + -0.0 6,611,019 - -0.0 6,611,380 + AO356_28435 0.26 +0.3 6,611,380 + AO356_28435 0.26 -1.6 6,611,398 + AO356_28435 0.28 -0.9 6,611,441 - AO356_28435 0.34 -0.0 6,611,849 + +1.0 6,612,034 + AO356_28440 0.13 +1.1
Or see this region's nucleotide sequence