Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28340

Experiment: Chloramphenicol 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28335 and AO356_28340 are separated by 307 nucleotidesAO356_28340 and AO356_28345 are separated by 504 nucleotides AO356_28335: AO356_28335 - peptidase, at 6,588,578 to 6,590,299 _28335 AO356_28340: AO356_28340 - GABA permease, at 6,590,607 to 6,592,007 _28340 AO356_28345: AO356_28345 - TetR family transcriptional regulator, at 6,592,512 to 6,593,123 _28345 Position (kb) 6590 6591 6592 6593Strain fitness (log2 ratio) -1 0 1 2at 6589.714 kb on - strand, within AO356_28335at 6590.175 kb on + strandat 6590.176 kb on - strandat 6590.438 kb on + strandat 6590.439 kb on - strandat 6590.700 kb on - strandat 6590.872 kb on + strand, within AO356_28340at 6591.058 kb on + strand, within AO356_28340at 6591.079 kb on + strand, within AO356_28340at 6591.080 kb on - strand, within AO356_28340at 6591.125 kb on + strand, within AO356_28340at 6591.126 kb on - strand, within AO356_28340at 6591.250 kb on + strand, within AO356_28340at 6591.557 kb on - strand, within AO356_28340at 6591.557 kb on - strand, within AO356_28340at 6591.651 kb on + strand, within AO356_28340at 6591.652 kb on - strand, within AO356_28340at 6591.706 kb on + strand, within AO356_28340at 6591.757 kb on + strand, within AO356_28340at 6591.757 kb on + strand, within AO356_28340at 6591.847 kb on + strand, within AO356_28340at 6592.014 kb on + strandat 6592.015 kb on - strandat 6592.273 kb on + strandat 6592.274 kb on - strandat 6592.274 kb on - strandat 6592.299 kb on + strandat 6592.343 kb on - strandat 6592.343 kb on - strandat 6592.494 kb on + strandat 6592.663 kb on - strand, within AO356_28345at 6592.963 kb on + strand, within AO356_28345

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml
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6,589,714 - AO356_28335 0.66 +0.9
6,590,175 + +0.4
6,590,176 - -0.4
6,590,438 + +0.0
6,590,439 - +0.6
6,590,700 - -0.4
6,590,872 + AO356_28340 0.19 +0.4
6,591,058 + AO356_28340 0.32 -0.1
6,591,079 + AO356_28340 0.34 -1.5
6,591,080 - AO356_28340 0.34 -0.7
6,591,125 + AO356_28340 0.37 +0.5
6,591,126 - AO356_28340 0.37 +0.7
6,591,250 + AO356_28340 0.46 -0.1
6,591,557 - AO356_28340 0.68 +0.2
6,591,557 - AO356_28340 0.68 -0.0
6,591,651 + AO356_28340 0.75 +0.8
6,591,652 - AO356_28340 0.75 -0.6
6,591,706 + AO356_28340 0.78 -0.6
6,591,757 + AO356_28340 0.82 -0.3
6,591,757 + AO356_28340 0.82 -0.5
6,591,847 + AO356_28340 0.89 -0.0
6,592,014 + -0.5
6,592,015 - -0.0
6,592,273 + +1.0
6,592,274 - -0.5
6,592,274 - -0.2
6,592,299 + -0.2
6,592,343 - +0.6
6,592,343 - +0.6
6,592,494 + +0.4
6,592,663 - AO356_28345 0.25 +0.6
6,592,963 + AO356_28345 0.74 +2.3

Or see this region's nucleotide sequence