Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26855 and AO356_26860 are separated by 21 nucleotides AO356_26860 and AO356_26865 are separated by 19 nucleotides
AO356_26855: AO356_26855 - hypothetical protein, at 6,115,240 to 6,116,325
_26855
AO356_26860: AO356_26860 - hypothetical protein, at 6,116,347 to 6,117,225
_26860
AO356_26865: AO356_26865 - hypothetical protein, at 6,117,245 to 6,118,504
_26865
Position (kb)
6116
6117
6118 Strain fitness (log2 ratio)
-2
-1
0
1 at 6115.384 kb on - strand, within AO356_26855 at 6115.500 kb on + strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.644 kb on + strand, within AO356_26855 at 6115.644 kb on + strand, within AO356_26855 at 6115.661 kb on - strand, within AO356_26855 at 6115.662 kb on + strand, within AO356_26855 at 6115.663 kb on - strand, within AO356_26855 at 6115.663 kb on - strand, within AO356_26855 at 6115.845 kb on - strand, within AO356_26855 at 6115.845 kb on - strand, within AO356_26855 at 6115.945 kb on + strand, within AO356_26855 at 6115.946 kb on - strand, within AO356_26855 at 6116.093 kb on - strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.193 kb on - strand, within AO356_26855 at 6116.200 kb on + strand, within AO356_26855 at 6116.211 kb on + strand, within AO356_26855 at 6116.212 kb on - strand, within AO356_26855 at 6116.212 kb on - strand, within AO356_26855 at 6116.311 kb on - strand at 6116.311 kb on - strand at 6116.311 kb on - strand at 6116.324 kb on - strand at 6116.407 kb on + strand at 6116.407 kb on + strand at 6116.408 kb on - strand at 6116.408 kb on - strand at 6116.419 kb on + strand at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.479 kb on + strand, within AO356_26860 at 6116.479 kb on + strand, within AO356_26860 at 6116.590 kb on + strand, within AO356_26860 at 6116.599 kb on - strand, within AO356_26860 at 6116.692 kb on + strand, within AO356_26860 at 6116.790 kb on + strand, within AO356_26860 at 6116.791 kb on - strand, within AO356_26860 at 6116.806 kb on + strand, within AO356_26860 at 6116.807 kb on - strand, within AO356_26860 at 6116.923 kb on + strand, within AO356_26860 at 6116.923 kb on + strand, within AO356_26860 at 6116.924 kb on - strand, within AO356_26860 at 6116.924 kb on - strand, within AO356_26860 at 6117.003 kb on + strand, within AO356_26860 at 6117.004 kb on - strand, within AO356_26860 at 6117.064 kb on + strand, within AO356_26860 at 6117.065 kb on - strand, within AO356_26860 at 6117.066 kb on + strand, within AO356_26860 at 6117.067 kb on - strand, within AO356_26860 at 6117.071 kb on + strand, within AO356_26860 at 6117.072 kb on - strand, within AO356_26860 at 6117.072 kb on - strand, within AO356_26860 at 6117.156 kb on - strand at 6117.156 kb on - strand at 6117.156 kb on - strand at 6117.242 kb on + strand at 6117.242 kb on + strand at 6117.243 kb on - strand at 6117.243 kb on - strand at 6117.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 6,115,384 - AO356_26855 0.13 +0.3 6,115,500 + AO356_26855 0.24 -0.6 6,115,547 - AO356_26855 0.28 -0.2 6,115,547 - AO356_26855 0.28 +1.1 6,115,547 - AO356_26855 0.28 -0.4 6,115,644 + AO356_26855 0.37 -0.4 6,115,644 + AO356_26855 0.37 +0.5 6,115,661 - AO356_26855 0.39 +0.4 6,115,662 + AO356_26855 0.39 -0.5 6,115,663 - AO356_26855 0.39 -0.4 6,115,663 - AO356_26855 0.39 +0.7 6,115,845 - AO356_26855 0.56 -0.5 6,115,845 - AO356_26855 0.56 +1.0 6,115,945 + AO356_26855 0.65 +0.2 6,115,946 - AO356_26855 0.65 +0.4 6,116,093 - AO356_26855 0.79 +0.1 6,116,104 + AO356_26855 0.80 +0.2 6,116,104 + AO356_26855 0.80 -0.2 6,116,104 + AO356_26855 0.80 +0.2 6,116,193 - AO356_26855 0.88 -0.7 6,116,200 + AO356_26855 0.88 -0.5 6,116,211 + AO356_26855 0.89 -0.2 6,116,212 - AO356_26855 0.90 -0.6 6,116,212 - AO356_26855 0.90 +0.2 6,116,311 - +1.0 6,116,311 - -0.3 6,116,311 - -0.1 6,116,324 - +0.0 6,116,407 + +0.2 6,116,407 + +0.2 6,116,408 - +0.5 6,116,408 - -0.3 6,116,419 + -0.1 6,116,476 + AO356_26860 0.15 -0.7 6,116,476 + AO356_26860 0.15 +0.1 6,116,476 + AO356_26860 0.15 -0.3 6,116,476 + AO356_26860 0.15 +0.8 6,116,476 + AO356_26860 0.15 -0.3 6,116,476 + AO356_26860 0.15 +0.7 6,116,477 - AO356_26860 0.15 -0.2 6,116,477 - AO356_26860 0.15 +0.2 6,116,477 - AO356_26860 0.15 +0.3 6,116,479 + AO356_26860 0.15 +0.3 6,116,479 + AO356_26860 0.15 +0.8 6,116,590 + AO356_26860 0.28 -0.3 6,116,599 - AO356_26860 0.29 +1.2 6,116,692 + AO356_26860 0.39 +1.1 6,116,790 + AO356_26860 0.50 +0.0 6,116,791 - AO356_26860 0.51 +0.3 6,116,806 + AO356_26860 0.52 +0.2 6,116,807 - AO356_26860 0.52 +0.4 6,116,923 + AO356_26860 0.66 +0.7 6,116,923 + AO356_26860 0.66 +0.8 6,116,924 - AO356_26860 0.66 -0.0 6,116,924 - AO356_26860 0.66 -0.4 6,117,003 + AO356_26860 0.75 -0.1 6,117,004 - AO356_26860 0.75 +0.5 6,117,064 + AO356_26860 0.82 +0.6 6,117,065 - AO356_26860 0.82 +0.8 6,117,066 + AO356_26860 0.82 +0.2 6,117,067 - AO356_26860 0.82 +0.3 6,117,071 + AO356_26860 0.82 +1.1 6,117,072 - AO356_26860 0.82 +0.3 6,117,072 - AO356_26860 0.82 +0.0 6,117,156 - +0.4 6,117,156 - +0.4 6,117,156 - +0.1 6,117,242 + -2.7 6,117,242 + +0.6 6,117,243 - +0.7 6,117,243 - +0.9 6,117,243 - +0.5
Or see this region's nucleotide sequence