Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25455 and AO356_25460 are separated by 196 nucleotides AO356_25460 and AO356_25465 are separated by 111 nucleotides
AO356_25455: AO356_25455 - transcriptional regulator, at 5,755,121 to 5,756,140
_25455
AO356_25460: AO356_25460 - sulfonate ABC transporter substrate-binding protein, at 5,756,337 to 5,757,344
_25460
AO356_25465: AO356_25465 - AraC family transcriptional regulator, at 5,757,456 to 5,758,448
_25465
Position (kb)
5756
5757
5758 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5756.075 kb on + strand at 5756.237 kb on + strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.695 kb on - strand, within AO356_25460 at 5756.946 kb on + strand, within AO356_25460 at 5756.991 kb on + strand, within AO356_25460 at 5756.991 kb on + strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5757.030 kb on + strand, within AO356_25460 at 5757.069 kb on + strand, within AO356_25460 at 5757.070 kb on - strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.082 kb on - strand, within AO356_25460 at 5757.082 kb on - strand, within AO356_25460 at 5757.144 kb on + strand, within AO356_25460 at 5757.144 kb on + strand, within AO356_25460 at 5757.144 kb on + strand, within AO356_25460 at 5757.144 kb on + strand, within AO356_25460 at 5757.145 kb on - strand, within AO356_25460 at 5757.145 kb on - strand, within AO356_25460 at 5757.155 kb on - strand, within AO356_25460 at 5757.240 kb on + strand, within AO356_25460 at 5757.240 kb on + strand, within AO356_25460 at 5757.241 kb on - strand, within AO356_25460 at 5757.241 kb on - strand, within AO356_25460 at 5757.246 kb on + strand at 5757.246 kb on + strand at 5757.247 kb on - strand at 5757.247 kb on - strand at 5757.247 kb on - strand at 5757.247 kb on - strand at 5757.247 kb on - strand at 5757.343 kb on - strand at 5757.665 kb on + strand, within AO356_25465 at 5757.666 kb on - strand, within AO356_25465 at 5757.782 kb on - strand, within AO356_25465 at 5757.800 kb on + strand, within AO356_25465 at 5757.800 kb on + strand, within AO356_25465 at 5757.908 kb on + strand, within AO356_25465 at 5758.146 kb on + strand, within AO356_25465 at 5758.227 kb on + strand, within AO356_25465 at 5758.246 kb on + strand, within AO356_25465
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 5,756,075 + -1.0 5,756,237 + +0.5 5,756,238 - +0.1 5,756,238 - -2.1 5,756,238 - -0.2 5,756,238 - +0.8 5,756,695 - AO356_25460 0.36 +0.3 5,756,946 + AO356_25460 0.60 +0.5 5,756,991 + AO356_25460 0.65 +1.8 5,756,991 + AO356_25460 0.65 -0.5 5,756,992 - AO356_25460 0.65 -0.1 5,756,992 - AO356_25460 0.65 +1.1 5,756,992 - AO356_25460 0.65 +0.2 5,757,030 + AO356_25460 0.69 +0.6 5,757,069 + AO356_25460 0.73 -1.0 5,757,070 - AO356_25460 0.73 -0.1 5,757,081 + AO356_25460 0.74 +0.2 5,757,081 + AO356_25460 0.74 -0.4 5,757,081 + AO356_25460 0.74 -0.3 5,757,082 - AO356_25460 0.74 -0.2 5,757,082 - AO356_25460 0.74 -0.1 5,757,144 + AO356_25460 0.80 -0.0 5,757,144 + AO356_25460 0.80 +0.0 5,757,144 + AO356_25460 0.80 +1.2 5,757,144 + AO356_25460 0.80 -0.8 5,757,145 - AO356_25460 0.80 -1.4 5,757,145 - AO356_25460 0.80 +0.5 5,757,155 - AO356_25460 0.81 +0.7 5,757,240 + AO356_25460 0.90 -0.2 5,757,240 + AO356_25460 0.90 +0.8 5,757,241 - AO356_25460 0.90 +1.5 5,757,241 - AO356_25460 0.90 -1.0 5,757,246 + -0.3 5,757,246 + -0.7 5,757,247 - +1.1 5,757,247 - -1.7 5,757,247 - -0.2 5,757,247 - -0.2 5,757,247 - -0.3 5,757,343 - +0.7 5,757,665 + AO356_25465 0.21 -1.1 5,757,666 - AO356_25465 0.21 +1.3 5,757,782 - AO356_25465 0.33 +0.5 5,757,800 + AO356_25465 0.35 +0.5 5,757,800 + AO356_25465 0.35 +0.9 5,757,908 + AO356_25465 0.46 -0.2 5,758,146 + AO356_25465 0.69 -0.0 5,758,227 + AO356_25465 0.78 -0.1 5,758,246 + AO356_25465 0.80 +0.2
Or see this region's nucleotide sequence