Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25450 and AO356_25455 are separated by 26 nucleotides AO356_25455 and AO356_25460 are separated by 196 nucleotides
AO356_25450: AO356_25450 - LysR family transcriptional regulator, at 5,754,153 to 5,755,094
_25450
AO356_25455: AO356_25455 - transcriptional regulator, at 5,755,121 to 5,756,140
_25455
AO356_25460: AO356_25460 - sulfonate ABC transporter substrate-binding protein, at 5,756,337 to 5,757,344
_25460
Position (kb) 5755
5756
5757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.153 kb on - strand at 5754.489 kb on + strand, within AO356_25450 at 5754.751 kb on + strand, within AO356_25450 at 5754.897 kb on + strand, within AO356_25450 at 5754.897 kb on + strand, within AO356_25450 at 5755.326 kb on + strand, within AO356_25455 at 5755.327 kb on - strand, within AO356_25455 at 5756.075 kb on + strand at 5756.237 kb on + strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.238 kb on - strand at 5756.695 kb on - strand, within AO356_25460 at 5756.946 kb on + strand, within AO356_25460 at 5756.991 kb on + strand, within AO356_25460 at 5756.991 kb on + strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5756.992 kb on - strand, within AO356_25460 at 5757.030 kb on + strand, within AO356_25460 at 5757.069 kb on + strand, within AO356_25460 at 5757.070 kb on - strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.081 kb on + strand, within AO356_25460 at 5757.082 kb on - strand, within AO356_25460 at 5757.082 kb on - strand, within AO356_25460
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 5,754,152 + +0.4 5,754,152 + +0.1 5,754,152 + -0.1 5,754,153 - +0.1 5,754,489 + AO356_25450 0.36 -0.9 5,754,751 + AO356_25450 0.63 -0.2 5,754,897 + AO356_25450 0.79 -0.7 5,754,897 + AO356_25450 0.79 -0.4 5,755,326 + AO356_25455 0.20 +0.6 5,755,327 - AO356_25455 0.20 +0.4 5,756,075 + -1.0 5,756,237 + +0.5 5,756,238 - +0.1 5,756,238 - -2.1 5,756,238 - -0.2 5,756,238 - +0.8 5,756,695 - AO356_25460 0.36 +0.3 5,756,946 + AO356_25460 0.60 +0.5 5,756,991 + AO356_25460 0.65 +1.8 5,756,991 + AO356_25460 0.65 -0.5 5,756,992 - AO356_25460 0.65 -0.1 5,756,992 - AO356_25460 0.65 +1.1 5,756,992 - AO356_25460 0.65 +0.2 5,757,030 + AO356_25460 0.69 +0.6 5,757,069 + AO356_25460 0.73 -1.0 5,757,070 - AO356_25460 0.73 -0.1 5,757,081 + AO356_25460 0.74 +0.2 5,757,081 + AO356_25460 0.74 -0.4 5,757,081 + AO356_25460 0.74 -0.3 5,757,082 - AO356_25460 0.74 -0.2 5,757,082 - AO356_25460 0.74 -0.1
Or see this region's nucleotide sequence