Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25440 and AO356_25445 are separated by 152 nucleotides AO356_25445 and AO356_25450 are separated by 36 nucleotides AO356_25450 and AO356_25455 are separated by 26 nucleotides
AO356_25440: AO356_25440 - histidine kinase, at 5,752,231 to 5,753,682
_25440
AO356_25445: AO356_25445 - hypothetical protein, at 5,753,835 to 5,754,116
_25445
AO356_25450: AO356_25450 - LysR family transcriptional regulator, at 5,754,153 to 5,755,094
_25450
AO356_25455: AO356_25455 - transcriptional regulator, at 5,755,121 to 5,756,140
_25455
Position (kb) 5754
5755
5756 Strain fitness (log2 ratio) -1
0
1 at 5753.462 kb on + strand, within AO356_25440 at 5753.462 kb on + strand, within AO356_25440 at 5753.462 kb on + strand, within AO356_25440 at 5753.463 kb on - strand, within AO356_25440 at 5753.561 kb on + strand at 5753.561 kb on + strand at 5753.561 kb on + strand at 5753.562 kb on - strand at 5753.562 kb on - strand at 5753.562 kb on - strand at 5753.831 kb on + strand at 5753.831 kb on + strand at 5753.832 kb on - strand at 5753.836 kb on + strand at 5753.836 kb on + strand at 5753.836 kb on + strand at 5753.837 kb on - strand at 5753.859 kb on + strand at 5753.859 kb on + strand at 5753.866 kb on + strand, within AO356_25445 at 5753.867 kb on - strand, within AO356_25445 at 5753.972 kb on + strand, within AO356_25445 at 5753.972 kb on + strand, within AO356_25445 at 5753.974 kb on + strand, within AO356_25445 at 5753.974 kb on + strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.975 kb on - strand, within AO356_25445 at 5753.976 kb on + strand, within AO356_25445 at 5754.054 kb on + strand, within AO356_25445 at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.152 kb on + strand at 5754.153 kb on - strand at 5754.489 kb on + strand, within AO356_25450 at 5754.751 kb on + strand, within AO356_25450 at 5754.897 kb on + strand, within AO356_25450 at 5754.897 kb on + strand, within AO356_25450 at 5755.326 kb on + strand, within AO356_25455 at 5755.327 kb on - strand, within AO356_25455 at 5756.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 5,753,462 + AO356_25440 0.85 -0.9 5,753,462 + AO356_25440 0.85 +0.6 5,753,462 + AO356_25440 0.85 +0.8 5,753,463 - AO356_25440 0.85 -0.6 5,753,561 + -0.1 5,753,561 + -0.6 5,753,561 + +0.0 5,753,562 - +0.5 5,753,562 - -0.2 5,753,562 - -0.4 5,753,831 + -0.2 5,753,831 + -0.4 5,753,832 - +0.1 5,753,836 + +0.2 5,753,836 + -0.6 5,753,836 + +0.7 5,753,837 - +0.4 5,753,859 + +0.4 5,753,859 + +1.1 5,753,866 + AO356_25445 0.11 +0.4 5,753,867 - AO356_25445 0.11 -0.0 5,753,972 + AO356_25445 0.49 +0.3 5,753,972 + AO356_25445 0.49 -0.3 5,753,974 + AO356_25445 0.49 +0.5 5,753,974 + AO356_25445 0.49 -0.6 5,753,975 - AO356_25445 0.50 +0.1 5,753,975 - AO356_25445 0.50 +0.8 5,753,975 - AO356_25445 0.50 -0.0 5,753,975 - AO356_25445 0.50 -0.0 5,753,976 + AO356_25445 0.50 -0.3 5,754,054 + AO356_25445 0.78 +0.7 5,754,152 + +0.4 5,754,152 + +0.1 5,754,152 + -0.1 5,754,153 - +0.1 5,754,489 + AO356_25450 0.36 -0.9 5,754,751 + AO356_25450 0.63 -0.2 5,754,897 + AO356_25450 0.79 -0.7 5,754,897 + AO356_25450 0.79 -0.4 5,755,326 + AO356_25455 0.20 +0.6 5,755,327 - AO356_25455 0.20 +0.4 5,756,075 + -1.0
Or see this region's nucleotide sequence