Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23885 and AO356_23890 are separated by 59 nucleotides AO356_23890 and AO356_23895 are separated by 257 nucleotides
AO356_23885: AO356_23885 - carbonate dehydratase, at 5,352,877 to 5,355,624
_23885
AO356_23890: AO356_23890 - universal stress protein, at 5,355,684 to 5,356,607
_23890
AO356_23895: AO356_23895 - hypothetical protein, at 5,356,865 to 5,358,115
_23895
Position (kb) 5355
5356
5357 Strain fitness (log2 ratio) -2
-1
0
1 at 5354.705 kb on - strand, within AO356_23885 at 5354.761 kb on + strand, within AO356_23885 at 5354.761 kb on + strand, within AO356_23885 at 5354.762 kb on - strand, within AO356_23885 at 5354.778 kb on - strand, within AO356_23885 at 5354.778 kb on - strand, within AO356_23885 at 5354.778 kb on - strand, within AO356_23885 at 5354.799 kb on - strand, within AO356_23885 at 5354.870 kb on - strand, within AO356_23885 at 5355.214 kb on + strand, within AO356_23885 at 5355.214 kb on + strand, within AO356_23885 at 5355.214 kb on + strand, within AO356_23885 at 5355.214 kb on + strand, within AO356_23885 at 5355.287 kb on + strand, within AO356_23885 at 5355.287 kb on + strand, within AO356_23885 at 5355.288 kb on - strand, within AO356_23885 at 5355.383 kb on - strand at 5355.383 kb on - strand at 5355.386 kb on + strand at 5355.386 kb on + strand at 5355.386 kb on + strand at 5355.386 kb on + strand at 5355.387 kb on - strand at 5355.604 kb on + strand at 5355.604 kb on + strand at 5355.604 kb on + strand at 5355.604 kb on + strand at 5355.604 kb on + strand at 5355.605 kb on - strand at 5355.605 kb on - strand at 5355.643 kb on + strand at 5355.643 kb on + strand at 5355.733 kb on + strand at 5355.733 kb on + strand at 5355.781 kb on + strand, within AO356_23890 at 5355.935 kb on - strand, within AO356_23890 at 5355.989 kb on - strand, within AO356_23890 at 5356.018 kb on + strand, within AO356_23890 at 5356.018 kb on + strand, within AO356_23890 at 5356.019 kb on - strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.024 kb on + strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.025 kb on - strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.102 kb on + strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.103 kb on - strand, within AO356_23890 at 5356.499 kb on + strand, within AO356_23890 at 5356.500 kb on - strand, within AO356_23890 at 5356.602 kb on - strand at 5356.768 kb on - strand at 5357.091 kb on - strand, within AO356_23895 at 5357.091 kb on - strand, within AO356_23895 at 5357.206 kb on - strand, within AO356_23895 at 5357.354 kb on + strand, within AO356_23895
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 5,354,705 - AO356_23885 0.67 +1.3 5,354,761 + AO356_23885 0.69 -0.5 5,354,761 + AO356_23885 0.69 -0.3 5,354,762 - AO356_23885 0.69 +0.3 5,354,778 - AO356_23885 0.69 -0.1 5,354,778 - AO356_23885 0.69 +0.6 5,354,778 - AO356_23885 0.69 -0.4 5,354,799 - AO356_23885 0.70 +0.1 5,354,870 - AO356_23885 0.73 +0.0 5,355,214 + AO356_23885 0.85 +0.9 5,355,214 + AO356_23885 0.85 -0.5 5,355,214 + AO356_23885 0.85 +0.1 5,355,214 + AO356_23885 0.85 -0.8 5,355,287 + AO356_23885 0.88 -0.0 5,355,287 + AO356_23885 0.88 +0.6 5,355,288 - AO356_23885 0.88 -2.2 5,355,383 - +1.1 5,355,383 - +0.1 5,355,386 + +1.5 5,355,386 + -0.3 5,355,386 + +0.0 5,355,386 + -1.0 5,355,387 - -0.5 5,355,604 + -0.2 5,355,604 + +0.5 5,355,604 + -0.8 5,355,604 + -0.9 5,355,604 + -0.0 5,355,605 - +0.8 5,355,605 - -0.2 5,355,643 + +0.1 5,355,643 + +0.1 5,355,733 + +0.9 5,355,733 + -0.2 5,355,781 + AO356_23890 0.10 +0.2 5,355,935 - AO356_23890 0.27 +0.2 5,355,989 - AO356_23890 0.33 -1.8 5,356,018 + AO356_23890 0.36 +0.5 5,356,018 + AO356_23890 0.36 -1.4 5,356,019 - AO356_23890 0.36 -0.5 5,356,024 + AO356_23890 0.37 +0.6 5,356,024 + AO356_23890 0.37 -0.6 5,356,024 + AO356_23890 0.37 -1.7 5,356,024 + AO356_23890 0.37 -0.1 5,356,024 + AO356_23890 0.37 -0.5 5,356,024 + AO356_23890 0.37 +0.0 5,356,025 - AO356_23890 0.37 -1.3 5,356,025 - AO356_23890 0.37 +0.1 5,356,025 - AO356_23890 0.37 +0.4 5,356,025 - AO356_23890 0.37 +0.6 5,356,102 + AO356_23890 0.45 -0.6 5,356,102 + AO356_23890 0.45 -1.9 5,356,102 + AO356_23890 0.45 -0.2 5,356,103 - AO356_23890 0.45 +0.7 5,356,103 - AO356_23890 0.45 -0.2 5,356,103 - AO356_23890 0.45 +0.7 5,356,499 + AO356_23890 0.88 +0.1 5,356,500 - AO356_23890 0.88 -0.3 5,356,602 - -1.4 5,356,768 - +0.1 5,357,091 - AO356_23895 0.18 +0.3 5,357,091 - AO356_23895 0.18 +0.4 5,357,206 - AO356_23895 0.27 -0.5 5,357,354 + AO356_23895 0.39 -0.9
Or see this region's nucleotide sequence