Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23885

Experiment: Chloramphenicol 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23870 and AO356_23880 are separated by 441 nucleotidesAO356_23880 and AO356_23885 are separated by 37 nucleotidesAO356_23885 and AO356_23890 are separated by 59 nucleotides AO356_23870: AO356_23870 - YeeE/YedE, at 5,351,484 to 5,351,918 _23870 AO356_23880: AO356_23880 - hypothetical protein, at 5,352,360 to 5,352,839 _23880 AO356_23885: AO356_23885 - carbonate dehydratase, at 5,352,877 to 5,355,624 _23885 AO356_23890: AO356_23890 - universal stress protein, at 5,355,684 to 5,356,607 _23890 Position (kb) 5352 5353 5354 5355 5356Strain fitness (log2 ratio) -2 -1 0 1 2at 5351.895 kb on - strandat 5351.947 kb on - strandat 5351.977 kb on + strandat 5352.222 kb on - strandat 5352.222 kb on - strandat 5352.299 kb on + strandat 5352.336 kb on + strandat 5352.361 kb on + strandat 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.488 kb on - strand, within AO356_23880at 5352.488 kb on - strand, within AO356_23880at 5352.536 kb on + strand, within AO356_23880at 5352.536 kb on + strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.782 kb on + strand, within AO356_23880at 5352.782 kb on + strand, within AO356_23880at 5352.783 kb on - strand, within AO356_23880at 5353.223 kb on + strand, within AO356_23885at 5353.227 kb on + strand, within AO356_23885at 5353.227 kb on + strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.275 kb on + strand, within AO356_23885at 5353.276 kb on - strand, within AO356_23885at 5353.383 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.523 kb on + strand, within AO356_23885at 5353.558 kb on - strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.738 kb on - strand, within AO356_23885at 5353.738 kb on - strand, within AO356_23885at 5353.832 kb on - strand, within AO356_23885at 5353.832 kb on - strand, within AO356_23885at 5354.117 kb on + strand, within AO356_23885at 5354.118 kb on - strand, within AO356_23885at 5354.118 kb on - strand, within AO356_23885at 5354.154 kb on + strand, within AO356_23885at 5354.155 kb on - strand, within AO356_23885at 5354.204 kb on + strand, within AO356_23885at 5354.204 kb on + strand, within AO356_23885at 5354.705 kb on - strand, within AO356_23885at 5354.761 kb on + strand, within AO356_23885at 5354.761 kb on + strand, within AO356_23885at 5354.762 kb on - strand, within AO356_23885at 5354.778 kb on - strand, within AO356_23885at 5354.778 kb on - strand, within AO356_23885at 5354.778 kb on - strand, within AO356_23885at 5354.799 kb on - strand, within AO356_23885at 5354.870 kb on - strand, within AO356_23885at 5355.214 kb on + strand, within AO356_23885at 5355.214 kb on + strand, within AO356_23885at 5355.214 kb on + strand, within AO356_23885at 5355.214 kb on + strand, within AO356_23885at 5355.287 kb on + strand, within AO356_23885at 5355.287 kb on + strand, within AO356_23885at 5355.288 kb on - strand, within AO356_23885at 5355.383 kb on - strandat 5355.383 kb on - strandat 5355.386 kb on + strandat 5355.386 kb on + strandat 5355.386 kb on + strandat 5355.386 kb on + strandat 5355.387 kb on - strandat 5355.604 kb on + strandat 5355.604 kb on + strandat 5355.604 kb on + strandat 5355.604 kb on + strandat 5355.604 kb on + strandat 5355.605 kb on - strandat 5355.605 kb on - strandat 5355.643 kb on + strandat 5355.643 kb on + strandat 5355.733 kb on + strandat 5355.733 kb on + strandat 5355.781 kb on + strand, within AO356_23890at 5355.935 kb on - strand, within AO356_23890at 5355.989 kb on - strand, within AO356_23890at 5356.018 kb on + strand, within AO356_23890at 5356.018 kb on + strand, within AO356_23890at 5356.019 kb on - strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.499 kb on + strand, within AO356_23890at 5356.500 kb on - strand, within AO356_23890at 5356.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml
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5,351,895 - +0.9
5,351,947 - +1.3
5,351,977 + +1.3
5,352,222 - +0.2
5,352,222 - +0.1
5,352,299 + -0.3
5,352,336 + +0.3
5,352,361 + -0.0
5,352,433 + AO356_23880 0.15 -0.5
5,352,433 + AO356_23880 0.15 -0.2
5,352,433 + AO356_23880 0.15 +1.1
5,352,433 + AO356_23880 0.15 -0.3
5,352,433 + AO356_23880 0.15 -0.2
5,352,434 - AO356_23880 0.15 +1.0
5,352,434 - AO356_23880 0.15 +0.0
5,352,434 - AO356_23880 0.15 +0.1
5,352,434 - AO356_23880 0.15 +0.4
5,352,434 - AO356_23880 0.15 +0.3
5,352,434 - AO356_23880 0.15 -0.3
5,352,448 + AO356_23880 0.18 -0.1
5,352,448 + AO356_23880 0.18 -0.3
5,352,448 + AO356_23880 0.18 +0.2
5,352,448 + AO356_23880 0.18 +0.0
5,352,449 - AO356_23880 0.19 +0.7
5,352,449 - AO356_23880 0.19 +0.0
5,352,449 - AO356_23880 0.19 +0.1
5,352,488 - AO356_23880 0.27 -0.6
5,352,488 - AO356_23880 0.27 +0.1
5,352,536 + AO356_23880 0.37 -1.5
5,352,536 + AO356_23880 0.37 +0.2
5,352,537 - AO356_23880 0.37 +0.1
5,352,537 - AO356_23880 0.37 -0.3
5,352,537 - AO356_23880 0.37 +0.5
5,352,537 - AO356_23880 0.37 +0.6
5,352,537 - AO356_23880 0.37 +0.2
5,352,782 + AO356_23880 0.88 +0.9
5,352,782 + AO356_23880 0.88 +0.6
5,352,783 - AO356_23880 0.88 +0.4
5,353,223 + AO356_23885 0.13 -1.0
5,353,227 + AO356_23885 0.13 +0.8
5,353,227 + AO356_23885 0.13 -0.1
5,353,228 - AO356_23885 0.13 +0.3
5,353,228 - AO356_23885 0.13 -0.6
5,353,228 - AO356_23885 0.13 -1.0
5,353,228 - AO356_23885 0.13 +0.5
5,353,228 - AO356_23885 0.13 -2.2
5,353,275 + AO356_23885 0.14 -0.4
5,353,276 - AO356_23885 0.15 +0.5
5,353,383 + AO356_23885 0.18 -0.2
5,353,434 + AO356_23885 0.20 +0.1
5,353,434 + AO356_23885 0.20 +0.4
5,353,434 + AO356_23885 0.20 +0.6
5,353,435 - AO356_23885 0.20 +0.7
5,353,435 - AO356_23885 0.20 +1.1
5,353,435 - AO356_23885 0.20 +0.0
5,353,435 - AO356_23885 0.20 +0.2
5,353,523 + AO356_23885 0.24 +0.1
5,353,558 - AO356_23885 0.25 +2.3
5,353,737 + AO356_23885 0.31 +1.2
5,353,737 + AO356_23885 0.31 -0.6
5,353,737 + AO356_23885 0.31 -0.1
5,353,737 + AO356_23885 0.31 -0.2
5,353,737 + AO356_23885 0.31 -0.1
5,353,737 + AO356_23885 0.31 -0.2
5,353,738 - AO356_23885 0.31 +0.1
5,353,738 - AO356_23885 0.31 +0.9
5,353,832 - AO356_23885 0.35 +0.1
5,353,832 - AO356_23885 0.35 -0.6
5,354,117 + AO356_23885 0.45 -0.3
5,354,118 - AO356_23885 0.45 -0.2
5,354,118 - AO356_23885 0.45 -0.3
5,354,154 + AO356_23885 0.46 -0.6
5,354,155 - AO356_23885 0.47 -0.1
5,354,204 + AO356_23885 0.48 -0.6
5,354,204 + AO356_23885 0.48 +0.5
5,354,705 - AO356_23885 0.67 +1.3
5,354,761 + AO356_23885 0.69 -0.5
5,354,761 + AO356_23885 0.69 -0.3
5,354,762 - AO356_23885 0.69 +0.3
5,354,778 - AO356_23885 0.69 -0.1
5,354,778 - AO356_23885 0.69 +0.6
5,354,778 - AO356_23885 0.69 -0.4
5,354,799 - AO356_23885 0.70 +0.1
5,354,870 - AO356_23885 0.73 +0.0
5,355,214 + AO356_23885 0.85 +0.9
5,355,214 + AO356_23885 0.85 -0.5
5,355,214 + AO356_23885 0.85 +0.1
5,355,214 + AO356_23885 0.85 -0.8
5,355,287 + AO356_23885 0.88 -0.0
5,355,287 + AO356_23885 0.88 +0.6
5,355,288 - AO356_23885 0.88 -2.2
5,355,383 - +1.1
5,355,383 - +0.1
5,355,386 + +1.5
5,355,386 + -0.3
5,355,386 + +0.0
5,355,386 + -1.0
5,355,387 - -0.5
5,355,604 + -0.2
5,355,604 + +0.5
5,355,604 + -0.8
5,355,604 + -0.9
5,355,604 + -0.0
5,355,605 - +0.8
5,355,605 - -0.2
5,355,643 + +0.1
5,355,643 + +0.1
5,355,733 + +0.9
5,355,733 + -0.2
5,355,781 + AO356_23890 0.10 +0.2
5,355,935 - AO356_23890 0.27 +0.2
5,355,989 - AO356_23890 0.33 -1.8
5,356,018 + AO356_23890 0.36 +0.5
5,356,018 + AO356_23890 0.36 -1.4
5,356,019 - AO356_23890 0.36 -0.5
5,356,024 + AO356_23890 0.37 +0.6
5,356,024 + AO356_23890 0.37 -0.6
5,356,024 + AO356_23890 0.37 -1.7
5,356,024 + AO356_23890 0.37 -0.1
5,356,024 + AO356_23890 0.37 -0.5
5,356,024 + AO356_23890 0.37 +0.0
5,356,025 - AO356_23890 0.37 -1.3
5,356,025 - AO356_23890 0.37 +0.1
5,356,025 - AO356_23890 0.37 +0.4
5,356,025 - AO356_23890 0.37 +0.6
5,356,102 + AO356_23890 0.45 -0.6
5,356,102 + AO356_23890 0.45 -1.9
5,356,102 + AO356_23890 0.45 -0.2
5,356,103 - AO356_23890 0.45 +0.7
5,356,103 - AO356_23890 0.45 -0.2
5,356,103 - AO356_23890 0.45 +0.7
5,356,499 + AO356_23890 0.88 +0.1
5,356,500 - AO356_23890 0.88 -0.3
5,356,602 - -1.4

Or see this region's nucleotide sequence