Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08140 and AO356_08145 are separated by 3 nucleotides AO356_08145 and AO356_08150 overlap by 4 nucleotides
AO356_08140: AO356_08140 - MATE family efflux transporter, at 1,820,260 to 1,821,609
_08140
AO356_08145: AO356_08145 - hypothetical protein, at 1,821,613 to 1,822,407
_08145
AO356_08150: AO356_08150 - type VI secretion protein, at 1,822,404 to 1,823,711
_08150
Position (kb)
1821
1822
1823 Strain fitness (log2 ratio)
-1
0
1 at 1820.714 kb on - strand, within AO356_08140 at 1820.714 kb on - strand, within AO356_08140 at 1821.315 kb on - strand, within AO356_08140 at 1821.328 kb on + strand, within AO356_08140 at 1821.328 kb on + strand, within AO356_08140 at 1821.334 kb on + strand, within AO356_08140 at 1821.335 kb on - strand, within AO356_08140 at 1821.335 kb on - strand, within AO356_08140 at 1821.343 kb on + strand, within AO356_08140 at 1821.379 kb on + strand, within AO356_08140 at 1821.380 kb on - strand, within AO356_08140 at 1821.380 kb on - strand, within AO356_08140 at 1821.608 kb on - strand at 1821.800 kb on + strand, within AO356_08145 at 1822.052 kb on + strand, within AO356_08145 at 1822.053 kb on - strand, within AO356_08145 at 1822.053 kb on - strand, within AO356_08145 at 1822.073 kb on + strand, within AO356_08145 at 1822.073 kb on + strand, within AO356_08145 at 1822.074 kb on - strand, within AO356_08145 at 1822.357 kb on + strand at 1822.357 kb on + strand at 1822.771 kb on + strand, within AO356_08150 at 1822.771 kb on + strand, within AO356_08150 at 1822.772 kb on - strand, within AO356_08150 at 1822.933 kb on + strand, within AO356_08150 at 1822.933 kb on + strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1822.934 kb on - strand, within AO356_08150 at 1823.135 kb on - strand, within AO356_08150
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 1,820,714 - AO356_08140 0.34 -0.1 1,820,714 - AO356_08140 0.34 +0.5 1,821,315 - AO356_08140 0.78 +0.7 1,821,328 + AO356_08140 0.79 +1.0 1,821,328 + AO356_08140 0.79 +0.1 1,821,334 + AO356_08140 0.80 +0.5 1,821,335 - AO356_08140 0.80 -0.2 1,821,335 - AO356_08140 0.80 +0.8 1,821,343 + AO356_08140 0.80 +0.6 1,821,379 + AO356_08140 0.83 +0.8 1,821,380 - AO356_08140 0.83 -0.9 1,821,380 - AO356_08140 0.83 -1.1 1,821,608 - +0.2 1,821,800 + AO356_08145 0.24 +0.3 1,822,052 + AO356_08145 0.55 +0.0 1,822,053 - AO356_08145 0.55 +0.1 1,822,053 - AO356_08145 0.55 +0.6 1,822,073 + AO356_08145 0.58 -0.6 1,822,073 + AO356_08145 0.58 -0.1 1,822,074 - AO356_08145 0.58 +0.5 1,822,357 + +0.5 1,822,357 + -0.3 1,822,771 + AO356_08150 0.28 +1.1 1,822,771 + AO356_08150 0.28 +0.1 1,822,772 - AO356_08150 0.28 +0.4 1,822,933 + AO356_08150 0.40 -0.1 1,822,933 + AO356_08150 0.40 +0.3 1,822,934 - AO356_08150 0.41 -1.4 1,822,934 - AO356_08150 0.41 +0.5 1,822,934 - AO356_08150 0.41 +0.3 1,822,934 - AO356_08150 0.41 -0.6 1,823,135 - AO356_08150 0.56 -0.5
Or see this region's nucleotide sequence