Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04275 and AO356_04280 are separated by 329 nucleotides AO356_04280 and AO356_04285 are separated by 229 nucleotides
AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684
_04275
AO356_04280: AO356_04280 - ATP-dependent RNA helicase HrpA, at 971,014 to 974,925
_04280
AO356_04285: AO356_04285 - isocitrate dehydrogenase, at 975,155 to 976,876
_04285
Position (kb) 971
972
973
974
975 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.651 kb on - strand at 970.651 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.717 kb on + strand at 970.718 kb on - strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.785 kb on + strand at 970.786 kb on - strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.837 kb on - strand at 970.838 kb on + strand at 970.839 kb on - strand at 970.839 kb on - strand at 970.857 kb on - strand at 971.106 kb on - strand at 971.126 kb on + strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.336 kb on + strand at 971.586 kb on + strand, within AO356_04280 at 971.587 kb on - strand, within AO356_04280 at 971.624 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.336 kb on - strand, within AO356_04280 at 972.336 kb on - strand, within AO356_04280 at 972.658 kb on + strand, within AO356_04280 at 972.659 kb on - strand, within AO356_04280 at 972.713 kb on + strand, within AO356_04280 at 972.713 kb on + strand, within AO356_04280 at 972.739 kb on + strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.884 kb on + strand, within AO356_04280 at 972.885 kb on - strand, within AO356_04280 at 973.080 kb on + strand, within AO356_04280 at 973.117 kb on + strand, within AO356_04280 at 973.117 kb on + strand, within AO356_04280 at 973.157 kb on + strand, within AO356_04280 at 973.158 kb on - strand, within AO356_04280 at 973.670 kb on + strand, within AO356_04280 at 973.671 kb on - strand, within AO356_04280 at 973.671 kb on - strand, within AO356_04280 at 973.743 kb on + strand, within AO356_04280 at 973.744 kb on - strand, within AO356_04280 at 973.744 kb on - strand, within AO356_04280 at 973.821 kb on - strand, within AO356_04280 at 973.934 kb on + strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 974.271 kb on + strand, within AO356_04280 at 974.271 kb on + strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.475 kb on - strand, within AO356_04280 at 974.724 kb on - strand at 974.931 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.156 kb on + strand at 975.176 kb on - strand at 975.252 kb on + strand at 975.252 kb on + strand at 975.252 kb on + strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.354 kb on + strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.444 kb on + strand, within AO356_04285 at 975.445 kb on - strand, within AO356_04285 at 975.445 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.549 kb on + strand, within AO356_04285 at 975.550 kb on - strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.683 kb on + strand, within AO356_04285 at 975.683 kb on + strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 970,596 + +0.1 970,596 + +0.3 970,596 + +0.4 970,596 + -0.0 970,596 + +1.1 970,596 + -0.3 970,596 + +0.1 970,596 + +0.2 970,596 + +0.5 970,596 + +0.6 970,597 - -0.5 970,597 - +0.3 970,597 - +0.2 970,597 - -0.8 970,597 - +0.5 970,597 - -0.8 970,597 - +0.7 970,597 - +0.6 970,597 - +0.3 970,597 - +0.2 970,600 + +0.1 970,600 + -0.4 970,600 + +0.8 970,601 - +0.6 970,601 - +0.7 970,601 - -0.4 970,601 - +0.2 970,650 + +0.4 970,650 + +1.0 970,650 + +0.5 970,651 - +0.0 970,651 - -0.6 970,679 - +0.7 970,679 - -0.4 970,679 - -0.1 970,717 + +0.6 970,718 - +0.2 970,731 + +0.2 970,731 + +0.7 970,731 + +0.3 970,731 + +0.9 970,732 - +0.2 970,732 - +0.3 970,732 - -0.2 970,738 - +0.9 970,738 - +0.3 970,738 - -0.1 970,785 + +0.1 970,786 - +0.2 970,836 + -0.8 970,836 + +0.3 970,836 + +0.2 970,837 - +0.2 970,838 + -0.1 970,839 - +0.3 970,839 - +0.4 970,857 - -0.3 971,106 - -3.1 971,126 + -1.5 971,127 - -1.6 971,127 - +0.4 971,127 - -0.5 971,127 - -1.6 971,336 + -1.3 971,586 + AO356_04280 0.15 -0.1 971,587 - AO356_04280 0.15 -1.5 971,624 + AO356_04280 0.16 +0.1 972,129 + AO356_04280 0.29 -1.2 972,129 + AO356_04280 0.29 -1.4 972,129 + AO356_04280 0.29 +0.4 972,129 + AO356_04280 0.29 -0.4 972,129 + AO356_04280 0.29 -0.6 972,129 + AO356_04280 0.29 -1.0 972,129 + AO356_04280 0.29 +0.2 972,130 - AO356_04280 0.29 -1.5 972,130 - AO356_04280 0.29 -1.1 972,130 - AO356_04280 0.29 -1.5 972,130 - AO356_04280 0.29 -1.0 972,130 - AO356_04280 0.29 -0.2 972,335 + AO356_04280 0.34 +0.2 972,335 + AO356_04280 0.34 -2.6 972,335 + AO356_04280 0.34 -2.3 972,336 - AO356_04280 0.34 -2.6 972,336 - AO356_04280 0.34 -0.6 972,658 + AO356_04280 0.42 -2.2 972,659 - AO356_04280 0.42 -2.3 972,713 + AO356_04280 0.43 -0.4 972,713 + AO356_04280 0.43 -0.7 972,739 + AO356_04280 0.44 -0.5 972,740 - AO356_04280 0.44 +0.5 972,740 - AO356_04280 0.44 -0.4 972,740 - AO356_04280 0.44 -0.9 972,740 - AO356_04280 0.44 -0.2 972,740 - AO356_04280 0.44 -1.3 972,767 + AO356_04280 0.45 -1.2 972,767 + AO356_04280 0.45 -1.9 972,767 + AO356_04280 0.45 +0.2 972,767 + AO356_04280 0.45 +0.1 972,768 - AO356_04280 0.45 -0.5 972,768 - AO356_04280 0.45 -0.0 972,768 - AO356_04280 0.45 -0.6 972,768 - AO356_04280 0.45 -0.0 972,884 + AO356_04280 0.48 -1.0 972,885 - AO356_04280 0.48 -0.5 973,080 + AO356_04280 0.53 +0.3 973,117 + AO356_04280 0.54 -0.6 973,117 + AO356_04280 0.54 -0.2 973,157 + AO356_04280 0.55 -1.0 973,158 - AO356_04280 0.55 -2.5 973,670 + AO356_04280 0.68 -1.3 973,671 - AO356_04280 0.68 -1.4 973,671 - AO356_04280 0.68 -1.2 973,743 + AO356_04280 0.70 -1.5 973,744 - AO356_04280 0.70 -0.2 973,744 - AO356_04280 0.70 -2.3 973,821 - AO356_04280 0.72 +0.2 973,934 + AO356_04280 0.75 -1.3 973,935 - AO356_04280 0.75 -0.9 973,935 - AO356_04280 0.75 -0.5 973,935 - AO356_04280 0.75 -0.2 973,935 - AO356_04280 0.75 -1.9 974,271 + AO356_04280 0.83 -0.2 974,271 + AO356_04280 0.83 -0.6 974,272 - AO356_04280 0.83 +0.3 974,272 - AO356_04280 0.83 -0.9 974,272 - AO356_04280 0.83 -0.9 974,475 - AO356_04280 0.88 -0.6 974,724 - +0.9 974,931 - +0.6 975,080 - +0.5 975,080 - +1.5 975,080 - +0.1 975,080 - +0.2 975,156 + +0.8 975,176 - +0.0 975,252 + -0.2 975,252 + -0.5 975,252 + -0.2 975,253 - +0.1 975,253 - +1.7 975,253 - +0.3 975,253 - -0.9 975,253 - -0.7 975,253 - +1.6 975,354 + AO356_04285 0.12 +0.0 975,355 - AO356_04285 0.12 +0.7 975,355 - AO356_04285 0.12 -0.7 975,355 - AO356_04285 0.12 +0.7 975,444 + AO356_04285 0.17 +1.1 975,445 - AO356_04285 0.17 +0.3 975,445 - AO356_04285 0.17 -1.7 975,451 - AO356_04285 0.17 -0.2 975,451 - AO356_04285 0.17 -0.0 975,451 - AO356_04285 0.17 -0.8 975,451 - AO356_04285 0.17 +0.9 975,451 - AO356_04285 0.17 +0.5 975,451 - AO356_04285 0.17 -1.2 975,451 - AO356_04285 0.17 -0.3 975,451 - AO356_04285 0.17 +0.1 975,451 - AO356_04285 0.17 +1.7 975,451 - AO356_04285 0.17 +0.5 975,451 - AO356_04285 0.17 +0.6 975,514 + AO356_04285 0.21 -0.2 975,514 + AO356_04285 0.21 -0.4 975,514 + AO356_04285 0.21 -0.0 975,515 - AO356_04285 0.21 +0.3 975,515 - AO356_04285 0.21 +1.7 975,515 - AO356_04285 0.21 +0.7 975,515 - AO356_04285 0.21 +0.7 975,549 + AO356_04285 0.23 +0.1 975,550 - AO356_04285 0.23 +0.7 975,597 + AO356_04285 0.26 +0.4 975,597 + AO356_04285 0.26 +0.3 975,597 + AO356_04285 0.26 -0.0 975,597 + AO356_04285 0.26 +0.8 975,683 + AO356_04285 0.31 +1.4 975,683 + AO356_04285 0.31 +0.8 975,684 - AO356_04285 0.31 +0.3 975,684 - AO356_04285 0.31 -0.2 975,684 - AO356_04285 0.31 -0.1 975,802 - AO356_04285 0.38 -0.7 975,802 - AO356_04285 0.38 -0.3 975,802 - AO356_04285 0.38 -1.7 975,802 - AO356_04285 0.38 +0.3 975,802 - AO356_04285 0.38 +0.6
Or see this region's nucleotide sequence