Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04260 and AO356_04265 are separated by 288 nucleotides AO356_04265 and AO356_04270 overlap by 7 nucleotides AO356_04270 and AO356_04275 are separated by 192 nucleotides
AO356_04260: AO356_04260 - porin, at 966,930 to 968,240
_04260
AO356_04265: AO356_04265 - anti-sigma factor, at 968,529 to 968,765
_04265
AO356_04270: AO356_04270 - RNA polymerase subunit sigma-24, at 968,759 to 969,370
_04270
AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684
_04275
Position (kb) 968
969
970 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.759 kb on + strand, within AO356_04260 at 967.769 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.870 kb on + strand, within AO356_04260 at 967.871 kb on - strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.894 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.933 kb on + strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.934 kb on - strand, within AO356_04260 at 967.945 kb on + strand, within AO356_04260 at 967.945 kb on + strand, within AO356_04260 at 967.960 kb on + strand, within AO356_04260 at 967.960 kb on + strand, within AO356_04260 at 968.000 kb on - strand, within AO356_04260 at 968.032 kb on + strand, within AO356_04260 at 968.032 kb on + strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.033 kb on - strand, within AO356_04260 at 968.053 kb on + strand, within AO356_04260 at 968.053 kb on + strand, within AO356_04260 at 968.260 kb on + strand at 968.261 kb on - strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.265 kb on + strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.266 kb on - strand at 968.450 kb on - strand at 968.476 kb on + strand at 968.476 kb on + strand at 968.863 kb on + strand, within AO356_04270 at 968.863 kb on + strand, within AO356_04270 at 968.909 kb on + strand, within AO356_04270 at 969.117 kb on + strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.118 kb on - strand, within AO356_04270 at 969.261 kb on + strand, within AO356_04270 at 969.262 kb on - strand, within AO356_04270 at 969.310 kb on - strand at 969.521 kb on + strand at 969.521 kb on + strand at 969.522 kb on - strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.654 kb on + strand at 969.655 kb on - strand at 969.655 kb on - strand at 969.700 kb on - strand, within AO356_04275
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 967,759 + AO356_04260 0.63 -0.2 967,769 + AO356_04260 0.64 +0.0 967,870 + AO356_04260 0.72 +0.6 967,870 + AO356_04260 0.72 +0.0 967,870 + AO356_04260 0.72 -0.7 967,870 + AO356_04260 0.72 +1.9 967,870 + AO356_04260 0.72 +0.3 967,871 - AO356_04260 0.72 -0.0 967,894 + AO356_04260 0.74 -0.3 967,894 + AO356_04260 0.74 +0.4 967,894 + AO356_04260 0.74 -0.8 967,933 + AO356_04260 0.77 +0.2 967,933 + AO356_04260 0.77 -0.7 967,933 + AO356_04260 0.77 +0.2 967,933 + AO356_04260 0.77 +0.6 967,934 - AO356_04260 0.77 +0.0 967,934 - AO356_04260 0.77 -0.8 967,934 - AO356_04260 0.77 -0.8 967,945 + AO356_04260 0.77 +0.4 967,945 + AO356_04260 0.77 -1.3 967,960 + AO356_04260 0.79 +0.7 967,960 + AO356_04260 0.79 -0.3 968,000 - AO356_04260 0.82 -0.3 968,032 + AO356_04260 0.84 +0.3 968,032 + AO356_04260 0.84 +0.1 968,033 - AO356_04260 0.84 +1.0 968,033 - AO356_04260 0.84 -1.0 968,033 - AO356_04260 0.84 -0.2 968,053 + AO356_04260 0.86 -0.3 968,053 + AO356_04260 0.86 -0.1 968,260 + +0.6 968,261 - +0.4 968,265 + +0.5 968,265 + +0.3 968,265 + -0.2 968,265 + -0.9 968,265 + -0.5 968,265 + -2.0 968,265 + +0.5 968,266 - +1.3 968,266 - +0.1 968,266 - -1.0 968,266 - +0.4 968,450 - +0.1 968,476 + +0.3 968,476 + +0.2 968,863 + AO356_04270 0.17 -0.1 968,863 + AO356_04270 0.17 -1.0 968,909 + AO356_04270 0.25 +0.5 969,117 + AO356_04270 0.58 +1.2 969,118 - AO356_04270 0.59 -0.7 969,118 - AO356_04270 0.59 +0.3 969,261 + AO356_04270 0.82 -1.0 969,262 - AO356_04270 0.82 +0.3 969,310 - -0.1 969,521 + -0.7 969,521 + -0.5 969,522 - -0.0 969,654 + -0.7 969,654 + +0.1 969,654 + +0.7 969,655 - +1.0 969,655 - -0.7 969,700 - AO356_04275 0.12 -0.2
Or see this region's nucleotide sequence