Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02580 and AO356_02585 are separated by 355 nucleotides AO356_02585 and AO356_02590 are separated by 169 nucleotides AO356_02590 and AO356_02595 are separated by 231 nucleotides
AO356_02580: AO356_02580 - GntR family transcriptional regulator, at 566,294 to 567,058
_02580
AO356_02585: AO356_02585 - hypothetical protein, at 567,414 to 568,604
_02585
AO356_02590: AO356_02590 - hypothetical protein, at 568,774 to 569,118
_02590
AO356_02595: AO356_02595 - D-alanyl-D-alanine carboxypeptidase, at 569,350 to 570,816
_02595
Position (kb) 567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 566.520 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 567.013 kb on + strand at 567.102 kb on + strand at 567.102 kb on + strand at 567.105 kb on + strand at 567.130 kb on + strand at 567.131 kb on - strand at 567.155 kb on + strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.208 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.386 kb on + strand at 567.386 kb on + strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.393 kb on + strand at 567.393 kb on + strand at 567.394 kb on - strand at 567.394 kb on - strand at 567.455 kb on + strand at 567.709 kb on - strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.913 kb on - strand, within AO356_02585 at 568.085 kb on + strand, within AO356_02585 at 568.085 kb on + strand, within AO356_02585 at 568.155 kb on + strand, within AO356_02585 at 568.156 kb on - strand, within AO356_02585 at 568.194 kb on - strand, within AO356_02585 at 568.302 kb on + strand, within AO356_02585 at 568.303 kb on - strand, within AO356_02585 at 568.705 kb on + strand at 568.932 kb on - strand, within AO356_02590 at 568.932 kb on - strand, within AO356_02590 at 569.133 kb on + strand at 569.133 kb on + strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.156 kb on - strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.267 kb on - strand at 569.334 kb on + strand at 569.343 kb on - strand at 569.343 kb on - strand at 569.343 kb on - strand at 569.546 kb on - strand, within AO356_02595 at 569.546 kb on - strand, within AO356_02595 at 569.599 kb on + strand, within AO356_02595 at 569.600 kb on - strand, within AO356_02595
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 566,520 + AO356_02580 0.30 -0.5 566,968 + AO356_02580 0.88 +0.6 566,968 + AO356_02580 0.88 +0.1 566,976 + AO356_02580 0.89 +0.7 566,976 + AO356_02580 0.89 +0.2 566,976 + AO356_02580 0.89 +1.4 566,977 - AO356_02580 0.89 +1.8 566,977 - AO356_02580 0.89 +0.4 566,977 - AO356_02580 0.89 +1.2 567,013 + -0.5 567,102 + -0.8 567,102 + -1.2 567,105 + -0.6 567,130 + +1.0 567,131 - +1.2 567,155 + +0.8 567,184 - +1.0 567,184 - +0.5 567,184 - +0.5 567,208 - +0.4 567,235 - +0.7 567,235 - +0.9 567,235 - -0.1 567,241 - -0.2 567,241 - -0.0 567,241 - -0.0 567,386 + -0.5 567,386 + -0.6 567,387 - -0.2 567,387 - -0.4 567,387 - +0.3 567,391 + +0.8 567,391 + +0.8 567,391 + +0.2 567,391 + +0.7 567,391 + -1.3 567,391 + -0.8 567,392 - -1.0 567,392 - -0.3 567,392 - +0.2 567,392 - +0.8 567,392 - +0.3 567,392 - +0.4 567,392 - -0.8 567,392 - -0.1 567,392 - +0.2 567,392 - +0.8 567,392 - +0.0 567,393 + +1.7 567,393 + +0.7 567,394 - -0.2 567,394 - -0.2 567,455 + +0.6 567,709 - AO356_02585 0.25 +0.6 567,729 + AO356_02585 0.26 +0.0 567,729 + AO356_02585 0.26 +0.4 567,729 + AO356_02585 0.26 +1.1 567,729 + AO356_02585 0.26 +0.7 567,729 + AO356_02585 0.26 +2.1 567,730 - AO356_02585 0.27 -0.0 567,730 - AO356_02585 0.27 -0.1 567,730 - AO356_02585 0.27 +0.5 567,731 + AO356_02585 0.27 -0.7 567,731 + AO356_02585 0.27 +0.3 567,731 + AO356_02585 0.27 -0.8 567,731 + AO356_02585 0.27 -0.5 567,731 + AO356_02585 0.27 +0.7 567,731 + AO356_02585 0.27 -0.4 567,731 + AO356_02585 0.27 +0.6 567,732 - AO356_02585 0.27 -0.4 567,732 - AO356_02585 0.27 -0.7 567,732 - AO356_02585 0.27 +0.6 567,732 - AO356_02585 0.27 +0.8 567,732 - AO356_02585 0.27 -0.1 567,732 - AO356_02585 0.27 +0.6 567,733 + AO356_02585 0.27 +0.8 567,733 + AO356_02585 0.27 +2.1 567,733 + AO356_02585 0.27 +0.5 567,733 + AO356_02585 0.27 +0.3 567,733 + AO356_02585 0.27 +0.6 567,733 + AO356_02585 0.27 +0.2 567,733 + AO356_02585 0.27 -0.0 567,733 + AO356_02585 0.27 -0.8 567,734 - AO356_02585 0.27 +0.5 567,734 - AO356_02585 0.27 +0.4 567,734 - AO356_02585 0.27 +0.2 567,734 - AO356_02585 0.27 +1.2 567,734 - AO356_02585 0.27 +0.3 567,912 + AO356_02585 0.42 +0.4 567,912 + AO356_02585 0.42 +1.6 567,913 - AO356_02585 0.42 +1.5 568,085 + AO356_02585 0.56 +1.0 568,085 + AO356_02585 0.56 +0.5 568,155 + AO356_02585 0.62 -0.4 568,156 - AO356_02585 0.62 -1.0 568,194 - AO356_02585 0.65 -0.2 568,302 + AO356_02585 0.75 +0.1 568,303 - AO356_02585 0.75 +0.3 568,705 + -0.1 568,932 - AO356_02590 0.46 -0.3 568,932 - AO356_02590 0.46 +0.2 569,133 + -0.5 569,133 + +0.8 569,134 - +0.5 569,134 - -0.6 569,134 - -0.1 569,134 - +0.2 569,134 - -0.4 569,137 + -1.4 569,137 + -1.4 569,137 + -1.3 569,137 + -0.3 569,137 + -0.4 569,137 + +1.2 569,138 - +0.6 569,138 - +0.1 569,138 - +0.0 569,138 - -0.5 569,138 - -1.8 569,156 - +0.7 569,266 + +0.1 569,266 + -0.3 569,266 + -0.2 569,266 + +0.2 569,267 - +0.4 569,334 + +0.3 569,343 - -0.2 569,343 - +0.5 569,343 - -3.0 569,546 - AO356_02595 0.13 +0.8 569,546 - AO356_02595 0.13 -1.2 569,599 + AO356_02595 0.17 -1.0 569,600 - AO356_02595 0.17 +0.4
Or see this region's nucleotide sequence