Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01415

Experiment: Chloramphenicol 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01405 and AO356_01410 are separated by 212 nucleotidesAO356_01410 and AO356_01415 are separated by 5 nucleotidesAO356_01415 and AO356_01420 are separated by 2 nucleotidesAO356_01420 and AO356_01425 are separated by 113 nucleotides AO356_01405: AO356_01405 - purine nucleoside permease, at 324,254 to 325,279 _01405 AO356_01410: AO356_01410 - hypothetical protein, at 325,492 to 325,776 _01410 AO356_01415: AO356_01415 - hypothetical protein, at 325,782 to 326,234 _01415 AO356_01420: AO356_01420 - hypothetical protein, at 326,237 to 326,734 _01420 AO356_01425: AO356_01425 - LysR family transcriptional regulator, at 326,848 to 327,780 _01425 Position (kb) 325 326 327Strain fitness (log2 ratio) -1 0 1at 324.863 kb on + strand, within AO356_01405at 324.864 kb on - strand, within AO356_01405at 324.870 kb on - strand, within AO356_01405at 324.870 kb on - strand, within AO356_01405at 325.034 kb on + strand, within AO356_01405at 325.034 kb on + strand, within AO356_01405at 325.034 kb on + strand, within AO356_01405at 325.048 kb on - strand, within AO356_01405at 325.160 kb on + strand, within AO356_01405at 325.534 kb on + strand, within AO356_01410at 325.619 kb on + strand, within AO356_01410at 325.807 kb on + strandat 325.808 kb on - strandat 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.996 kb on + strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 325.997 kb on - strand, within AO356_01415at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.436 kb on + strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.437 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.658 kb on - strand, within AO356_01420at 326.661 kb on - strand, within AO356_01420at 327.203 kb on + strand, within AO356_01425at 327.203 kb on + strand, within AO356_01425at 327.204 kb on - strand, within AO356_01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml
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324,863 + AO356_01405 0.59 +1.4
324,864 - AO356_01405 0.59 +1.4
324,870 - AO356_01405 0.60 -1.5
324,870 - AO356_01405 0.60 +1.2
325,034 + AO356_01405 0.76 +0.3
325,034 + AO356_01405 0.76 -0.1
325,034 + AO356_01405 0.76 -0.1
325,048 - AO356_01405 0.77 +0.7
325,160 + AO356_01405 0.88 -1.2
325,534 + AO356_01410 0.15 -0.7
325,619 + AO356_01410 0.45 -0.1
325,807 + +0.3
325,808 - +0.8
325,996 + AO356_01415 0.47 -1.1
325,996 + AO356_01415 0.47 -0.6
325,996 + AO356_01415 0.47 +0.2
325,996 + AO356_01415 0.47 -0.1
325,996 + AO356_01415 0.47 +0.6
325,996 + AO356_01415 0.47 -0.3
325,997 - AO356_01415 0.47 -0.1
325,997 - AO356_01415 0.47 -0.1
325,997 - AO356_01415 0.47 +0.8
325,997 - AO356_01415 0.47 -0.1
325,997 - AO356_01415 0.47 -0.5
325,997 - AO356_01415 0.47 -0.4
325,997 - AO356_01415 0.47 +0.6
325,997 - AO356_01415 0.47 +0.1
326,436 + AO356_01420 0.40 +0.7
326,436 + AO356_01420 0.40 -0.7
326,436 + AO356_01420 0.40 -1.7
326,437 - AO356_01420 0.40 +0.1
326,437 - AO356_01420 0.40 +0.1
326,437 - AO356_01420 0.40 -0.2
326,437 - AO356_01420 0.40 -0.9
326,437 - AO356_01420 0.40 +0.2
326,658 - AO356_01420 0.85 +0.6
326,658 - AO356_01420 0.85 -0.4
326,661 - AO356_01420 0.85 +0.3
327,203 + AO356_01425 0.38 +0.3
327,203 + AO356_01425 0.38 -0.2
327,204 - AO356_01425 0.38 -1.1

Or see this region's nucleotide sequence