Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00150

Experiment: Chloramphenicol 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00135 and AO356_00140 are separated by 70 nucleotidesAO356_00140 and AO356_00150 are separated by 648 nucleotidesAO356_00150 and AO356_00155 are separated by 89 nucleotidesAO356_00155 and AO356_00160 overlap by 4 nucleotides AO356_00135: AO356_00135 - hypothetical protein, at 26,542 to 27,123 _00135 AO356_00140: AO356_00140 - hypothetical protein, at 27,194 to 27,451 _00140 AO356_00150: AO356_00150 - ABC transporter substrate-binding protein, at 28,100 to 28,864 _00150 AO356_00155: AO356_00155 - pili assembly chaperone, at 28,954 to 29,496 _00155 AO356_00160: AO356_00160 - chemotaxis protein, at 29,493 to 30,164 _00160 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1at 27.105 kb on + strandat 27.105 kb on + strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.106 kb on - strandat 27.139 kb on + strandat 27.139 kb on + strandat 27.139 kb on + strandat 27.140 kb on - strandat 27.140 kb on - strandat 27.140 kb on - strandat 27.239 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.248 kb on + strand, within AO356_00140at 27.249 kb on - strand, within AO356_00140at 27.267 kb on - strand, within AO356_00140at 27.372 kb on + strand, within AO356_00140at 27.373 kb on - strand, within AO356_00140at 27.373 kb on - strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.411 kb on + strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.412 kb on - strand, within AO356_00140at 27.565 kb on + strandat 27.565 kb on + strandat 27.704 kb on + strandat 27.704 kb on + strandat 27.705 kb on - strandat 27.861 kb on + strandat 28.042 kb on + strandat 28.052 kb on + strandat 28.053 kb on - strandat 28.188 kb on + strand, within AO356_00150at 28.199 kb on + strand, within AO356_00150at 28.200 kb on - strand, within AO356_00150at 28.269 kb on + strand, within AO356_00150at 28.269 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.385 kb on + strand, within AO356_00150at 28.386 kb on - strand, within AO356_00150at 28.386 kb on - strand, within AO356_00150at 28.493 kb on + strand, within AO356_00150at 28.516 kb on + strand, within AO356_00150at 28.548 kb on - strand, within AO356_00150at 28.640 kb on - strand, within AO356_00150at 28.669 kb on + strand, within AO356_00150at 28.698 kb on - strand, within AO356_00150at 28.733 kb on - strand, within AO356_00150at 28.761 kb on - strand, within AO356_00150at 28.761 kb on - strand, within AO356_00150at 28.835 kb on + strandat 28.835 kb on + strandat 28.845 kb on + strandat 28.845 kb on + strandat 28.845 kb on + strandat 28.846 kb on - strandat 28.862 kb on + strandat 28.863 kb on - strandat 28.888 kb on + strandat 28.889 kb on - strandat 29.020 kb on - strand, within AO356_00155at 29.022 kb on + strand, within AO356_00155at 29.023 kb on - strand, within AO356_00155at 29.023 kb on - strand, within AO356_00155at 29.023 kb on - strand, within AO356_00155at 29.127 kb on + strand, within AO356_00155at 29.128 kb on - strand, within AO356_00155at 29.128 kb on - strand, within AO356_00155at 29.207 kb on + strand, within AO356_00155at 29.208 kb on - strand, within AO356_00155at 29.219 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.236 kb on + strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.237 kb on - strand, within AO356_00155at 29.286 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.292 kb on - strand, within AO356_00155at 29.346 kb on - strand, within AO356_00155at 29.357 kb on + strand, within AO356_00155at 29.358 kb on - strand, within AO356_00155at 29.358 kb on - strand, within AO356_00155at 29.568 kb on + strand, within AO356_00160at 29.568 kb on + strand, within AO356_00160at 29.578 kb on - strand, within AO356_00160at 29.578 kb on - strand, within AO356_00160at 29.620 kb on + strand, within AO356_00160at 29.738 kb on + strand, within AO356_00160at 29.738 kb on + strand, within AO356_00160at 29.777 kb on - strand, within AO356_00160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml
remove
27,105 + +0.7
27,105 + +0.6
27,106 - +1.3
27,106 - +1.4
27,106 - -1.1
27,106 - +0.1
27,106 - -0.4
27,106 - -0.2
27,139 + +0.1
27,139 + +0.3
27,139 + +1.5
27,140 - -0.9
27,140 - +0.7
27,140 - +0.0
27,239 + AO356_00140 0.17 +0.5
27,248 + AO356_00140 0.21 +0.2
27,248 + AO356_00140 0.21 -0.1
27,248 + AO356_00140 0.21 -1.4
27,249 - AO356_00140 0.21 -0.2
27,267 - AO356_00140 0.28 +0.8
27,372 + AO356_00140 0.69 +0.9
27,373 - AO356_00140 0.69 +1.2
27,373 - AO356_00140 0.69 +1.3
27,411 + AO356_00140 0.84 -0.1
27,411 + AO356_00140 0.84 +0.6
27,411 + AO356_00140 0.84 +0.8
27,411 + AO356_00140 0.84 -0.3
27,411 + AO356_00140 0.84 +0.4
27,412 - AO356_00140 0.84 +0.2
27,412 - AO356_00140 0.84 +0.7
27,412 - AO356_00140 0.84 +1.0
27,565 + -1.9
27,565 + -0.0
27,704 + +0.3
27,704 + +0.3
27,705 - -2.5
27,861 + -0.4
28,042 + +0.2
28,052 + +0.0
28,053 - +0.4
28,188 + AO356_00150 0.12 +0.3
28,199 + AO356_00150 0.13 -0.9
28,200 - AO356_00150 0.13 -0.6
28,269 + AO356_00150 0.22 +0.1
28,269 + AO356_00150 0.22 +0.5
28,385 + AO356_00150 0.37 -0.3
28,385 + AO356_00150 0.37 -0.5
28,385 + AO356_00150 0.37 +0.3
28,386 - AO356_00150 0.37 +0.4
28,386 - AO356_00150 0.37 +0.5
28,493 + AO356_00150 0.51 -0.5
28,516 + AO356_00150 0.54 +0.4
28,548 - AO356_00150 0.59 +0.6
28,640 - AO356_00150 0.71 +0.0
28,669 + AO356_00150 0.74 -0.4
28,698 - AO356_00150 0.78 -0.4
28,733 - AO356_00150 0.83 -0.8
28,761 - AO356_00150 0.86 +0.5
28,761 - AO356_00150 0.86 -0.5
28,835 + +0.0
28,835 + +0.3
28,845 + -1.6
28,845 + -0.4
28,845 + -0.2
28,846 - -0.6
28,862 + +0.7
28,863 - +0.2
28,888 + -0.0
28,889 - -0.4
29,020 - AO356_00155 0.12 +0.2
29,022 + AO356_00155 0.13 +0.9
29,023 - AO356_00155 0.13 +0.4
29,023 - AO356_00155 0.13 -0.7
29,023 - AO356_00155 0.13 +0.4
29,127 + AO356_00155 0.32 -0.4
29,128 - AO356_00155 0.32 -0.5
29,128 - AO356_00155 0.32 +0.1
29,207 + AO356_00155 0.47 -0.5
29,208 - AO356_00155 0.47 +0.3
29,219 + AO356_00155 0.49 +0.4
29,236 + AO356_00155 0.52 -0.5
29,236 + AO356_00155 0.52 +0.5
29,236 + AO356_00155 0.52 -0.4
29,236 + AO356_00155 0.52 -0.2
29,236 + AO356_00155 0.52 -0.0
29,237 - AO356_00155 0.52 -0.0
29,237 - AO356_00155 0.52 -0.5
29,237 - AO356_00155 0.52 +0.4
29,286 - AO356_00155 0.61 +0.9
29,292 - AO356_00155 0.62 +0.3
29,292 - AO356_00155 0.62 -1.9
29,292 - AO356_00155 0.62 +0.2
29,346 - AO356_00155 0.72 -0.4
29,357 + AO356_00155 0.74 -1.1
29,358 - AO356_00155 0.74 +0.4
29,358 - AO356_00155 0.74 +0.6
29,568 + AO356_00160 0.11 -0.7
29,568 + AO356_00160 0.11 -0.4
29,578 - AO356_00160 0.13 +0.8
29,578 - AO356_00160 0.13 -0.9
29,620 + AO356_00160 0.19 -0.8
29,738 + AO356_00160 0.36 +0.6
29,738 + AO356_00160 0.36 -0.3
29,777 - AO356_00160 0.42 +0.2

Or see this region's nucleotide sequence