Experiment: Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00070 and AO356_00075 are separated by 4 nucleotides AO356_00075 and AO356_00080 are separated by 85 nucleotides AO356_00080 and AO356_00085 are separated by 14 nucleotides
AO356_00070: AO356_00070 - hypothetical protein, at 14,887 to 15,117
_00070
AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964
_00075
AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259
_00080
AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845
_00085
Position (kb) 16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.090 kb on + strand, within AO356_00070 at 15.214 kb on - strand, within AO356_00075 at 15.214 kb on - strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.261 kb on - strand, within AO356_00075 at 15.263 kb on + strand, within AO356_00075 at 15.263 kb on + strand, within AO356_00075 at 15.264 kb on - strand, within AO356_00075 at 15.264 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.404 kb on - strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.480 kb on + strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.509 kb on - strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.795 kb on - strand, within AO356_00075 at 15.935 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 16.044 kb on - strand at 16.107 kb on - strand, within AO356_00080 at 16.116 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.188 kb on + strand, within AO356_00080 at 16.373 kb on - strand at 16.378 kb on + strand at 16.409 kb on + strand at 16.446 kb on - strand, within AO356_00085 at 16.523 kb on + strand, within AO356_00085 at 16.524 kb on - strand, within AO356_00085 at 16.546 kb on + strand, within AO356_00085 at 16.547 kb on - strand, within AO356_00085 at 16.549 kb on + strand, within AO356_00085 at 16.550 kb on - strand, within AO356_00085 at 16.890 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.895 kb on - strand, within AO356_00085 at 17.117 kb on - strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.005 mg/ml remove 15,090 + AO356_00070 0.88 -0.2 15,214 - AO356_00075 0.11 -0.7 15,214 - AO356_00075 0.11 +1.8 15,260 + AO356_00075 0.16 +1.4 15,260 + AO356_00075 0.16 -0.6 15,260 + AO356_00075 0.16 +0.2 15,261 - AO356_00075 0.16 +0.5 15,263 + AO356_00075 0.17 +0.2 15,263 + AO356_00075 0.17 +0.4 15,264 - AO356_00075 0.17 +0.5 15,264 - AO356_00075 0.17 -1.0 15,337 - AO356_00075 0.26 -0.3 15,337 - AO356_00075 0.26 -1.2 15,337 - AO356_00075 0.26 -0.7 15,404 - AO356_00075 0.33 -0.4 15,411 + AO356_00075 0.34 -0.1 15,411 + AO356_00075 0.34 -0.4 15,411 + AO356_00075 0.34 +0.6 15,412 - AO356_00075 0.34 -0.0 15,412 - AO356_00075 0.34 +0.5 15,414 + AO356_00075 0.35 -0.4 15,414 + AO356_00075 0.35 -1.9 15,415 - AO356_00075 0.35 -0.6 15,415 - AO356_00075 0.35 +0.6 15,415 - AO356_00075 0.35 +0.9 15,480 + AO356_00075 0.42 +0.1 15,481 - AO356_00075 0.43 +0.3 15,481 - AO356_00075 0.43 +0.7 15,481 - AO356_00075 0.43 +0.7 15,481 - AO356_00075 0.43 +0.3 15,481 - AO356_00075 0.43 -0.7 15,508 + AO356_00075 0.46 +0.7 15,508 + AO356_00075 0.46 -0.2 15,509 - AO356_00075 0.46 -0.1 15,562 + AO356_00075 0.52 +0.1 15,562 + AO356_00075 0.52 -0.2 15,748 + AO356_00075 0.74 +0.5 15,748 + AO356_00075 0.74 -0.2 15,749 - AO356_00075 0.74 +0.7 15,749 - AO356_00075 0.74 +0.7 15,749 - AO356_00075 0.74 +0.5 15,766 - AO356_00075 0.76 +0.1 15,766 - AO356_00075 0.76 +0.4 15,775 - AO356_00075 0.77 -0.4 15,775 - AO356_00075 0.77 -0.3 15,775 - AO356_00075 0.77 +0.1 15,775 - AO356_00075 0.77 +0.1 15,795 - AO356_00075 0.80 +0.2 15,935 - -0.6 15,983 - +0.4 15,983 - -0.1 15,983 - +0.1 16,044 - -0.7 16,107 - AO356_00080 0.27 -0.2 16,116 + AO356_00080 0.31 +1.6 16,119 + AO356_00080 0.33 +0.6 16,119 + AO356_00080 0.33 +0.6 16,119 + AO356_00080 0.33 -1.2 16,120 - AO356_00080 0.33 +0.3 16,120 - AO356_00080 0.33 -0.3 16,120 - AO356_00080 0.33 +0.2 16,120 - AO356_00080 0.33 +0.4 16,120 - AO356_00080 0.33 +0.6 16,188 + AO356_00080 0.66 -1.9 16,373 - -0.4 16,378 + -0.2 16,409 + +0.7 16,446 - AO356_00085 0.11 -0.4 16,523 + AO356_00085 0.16 +0.8 16,524 - AO356_00085 0.16 +1.0 16,546 + AO356_00085 0.17 +0.9 16,547 - AO356_00085 0.17 +0.4 16,549 + AO356_00085 0.17 -1.6 16,550 - AO356_00085 0.18 +0.7 16,890 + AO356_00085 0.39 +1.2 16,894 + AO356_00085 0.39 +0.9 16,894 + AO356_00085 0.39 -0.3 16,895 - AO356_00085 0.40 -2.4 17,117 - AO356_00085 0.54 +1.3 17,236 + AO356_00085 0.61 +0.8 17,236 + AO356_00085 0.61 +0.7 17,237 - AO356_00085 0.61 +0.9 17,237 - AO356_00085 0.61 -0.4
Or see this region's nucleotide sequence