Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3670 and Shew_3671 are separated by 206 nucleotides Shew_3671 and Shew_3672 are separated by 32 nucleotides Shew_3672 and Shew_3673 are separated by 2 nucleotides Shew_3673 and Shew_3674 are separated by 14 nucleotides
Shew_3670: Shew_3670 - metal dependent phosphohydrolase (RefSeq), at 4,372,600 to 4,373,805
_3670
Shew_3671: Shew_3671 - hypothetical protein (RefSeq), at 4,374,012 to 4,374,218
_3671
Shew_3672: Shew_3672 - hypothetical protein (RefSeq), at 4,374,251 to 4,375,006
_3672
Shew_3673: Shew_3673 - hypothetical protein (RefSeq), at 4,375,009 to 4,375,548
_3673
Shew_3674: Shew_3674 - cobalt transport protein (RefSeq), at 4,375,563 to 4,376,216
_3674
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -1
0
1 at 4373.295 kb on + strand, within Shew_3670 at 4373.410 kb on + strand, within Shew_3670 at 4373.558 kb on + strand, within Shew_3670 at 4374.009 kb on - strand at 4374.208 kb on - strand at 4374.225 kb on - strand at 4374.241 kb on - strand at 4374.293 kb on + strand at 4374.342 kb on + strand, within Shew_3672 at 4374.342 kb on + strand, within Shew_3672 at 4374.342 kb on + strand, within Shew_3672 at 4374.350 kb on - strand, within Shew_3672 at 4374.350 kb on - strand, within Shew_3672 at 4374.368 kb on - strand, within Shew_3672 at 4374.391 kb on - strand, within Shew_3672 at 4374.466 kb on + strand, within Shew_3672 at 4374.466 kb on + strand, within Shew_3672 at 4374.466 kb on + strand, within Shew_3672 at 4374.466 kb on + strand, within Shew_3672 at 4374.466 kb on + strand, within Shew_3672 at 4374.474 kb on - strand, within Shew_3672 at 4374.528 kb on - strand, within Shew_3672 at 4374.554 kb on + strand, within Shew_3672 at 4374.591 kb on - strand, within Shew_3672 at 4374.591 kb on - strand, within Shew_3672 at 4374.639 kb on + strand, within Shew_3672 at 4374.830 kb on + strand, within Shew_3672 at 4375.184 kb on + strand, within Shew_3673 at 4375.189 kb on + strand, within Shew_3673 at 4375.189 kb on + strand, within Shew_3673 at 4375.449 kb on + strand, within Shew_3673 at 4375.675 kb on + strand, within Shew_3674 at 4375.683 kb on - strand, within Shew_3674
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 4,373,295 + Shew_3670 0.58 +0.1 4,373,410 + Shew_3670 0.67 +0.1 4,373,558 + Shew_3670 0.79 +0.5 4,374,009 - -0.1 4,374,208 - -0.1 4,374,225 - -0.1 4,374,241 - -0.1 4,374,293 + +1.1 4,374,342 + Shew_3672 0.12 -0.0 4,374,342 + Shew_3672 0.12 -0.8 4,374,342 + Shew_3672 0.12 -0.1 4,374,350 - Shew_3672 0.13 +0.2 4,374,350 - Shew_3672 0.13 +0.5 4,374,368 - Shew_3672 0.15 +0.3 4,374,391 - Shew_3672 0.19 +0.0 4,374,466 + Shew_3672 0.28 -0.1 4,374,466 + Shew_3672 0.28 -1.2 4,374,466 + Shew_3672 0.28 +0.0 4,374,466 + Shew_3672 0.28 -0.0 4,374,466 + Shew_3672 0.28 -1.2 4,374,474 - Shew_3672 0.29 -0.5 4,374,528 - Shew_3672 0.37 -0.3 4,374,554 + Shew_3672 0.40 +0.3 4,374,591 - Shew_3672 0.45 +0.3 4,374,591 - Shew_3672 0.45 -0.5 4,374,639 + Shew_3672 0.51 -0.3 4,374,830 + Shew_3672 0.77 -1.0 4,375,184 + Shew_3673 0.32 +0.0 4,375,189 + Shew_3673 0.33 +0.4 4,375,189 + Shew_3673 0.33 -0.0 4,375,449 + Shew_3673 0.81 -0.0 4,375,675 + Shew_3674 0.17 -0.2 4,375,683 - Shew_3674 0.18 +0.4
Or see this region's nucleotide sequence