Strain Fitness in Shewanella loihica PV-4 around Shew_3160

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
3,760,492	+		Shew_3159	0.68	+0.2
3,760,749	-				+0.1
3,760,821	-				-1.0
3,760,823	+				+0.1
3,760,824	+				+0.4
3,760,843	-				+0.1
3,760,892	-				+0.2
3,760,908	+				+0.9
3,760,908	+				+0.8
3,760,916	-				+0.3
3,760,916	-				-0.1
3,760,916	-				-0.1
3,760,916	-				-1.2
3,760,930	-				+0.4
3,760,930	-				+0.5
3,760,930	-				+0.4
3,760,930	-				-0.3
3,760,940	+				+1.4
3,760,940	+				-0.1
3,760,946	+				-0.2
3,760,947	-				-0.5
3,760,948	-				+0.2
3,760,953	-				+0.2
3,760,953	-				-0.0
3,760,954	-				+0.8
3,760,962	+				+0.3
3,760,965	-				-0.1
3,760,965	-				-0.9
3,760,970	-				+0.6
3,760,983	+				+0.1
3,760,990	-				+0.3
3,760,990	-				-0.3
3,760,990	-				-0.0
3,760,990	-				+0.6
3,760,990	+				+0.0
3,760,991	-				-0.2
3,760,991	-				+0.0
3,760,998	-				+0.2
3,761,009	-				-0.1
3,761,014	-				-0.5
3,761,130	+				+0.1
3,761,131	+				-0.1
3,761,138	-				+0.0
3,761,139	-				+0.1
3,761,145	+				-0.1
3,761,152	-				+0.2
3,761,152	-				+0.3
3,761,207	+				+0.2
3,761,207	+				-0.2
3,761,208	+				+0.0
3,761,208	+				+0.2
3,761,214	+				+0.4
3,761,215	-				-0.0
3,761,216	-				+0.4
3,761,216	-				-0.6
3,761,220	+				+0.5
3,761,221	+				-0.5
3,761,222	+				+0.3
3,761,242	-				-0.6
3,761,242	-				-0.0
3,761,315	+				+0.3
3,761,410	-				+0.4
3,761,413	+				-0.0
3,761,418	+				-0.1
3,761,425	+				+0.2
3,761,444	+		Shew_3160	0.12	+0.1
3,761,450	+		Shew_3160	0.13	+0.2
3,761,458	-		Shew_3160	0.15	+0.2
3,761,462	+		Shew_3160	0.16	-0.1
3,761,462	-		Shew_3160	0.16	+0.1
3,761,462	+		Shew_3160	0.16	+1.0
3,761,468	+		Shew_3160	0.17	+0.0
3,761,469	+		Shew_3160	0.17	+0.2
3,761,469	+		Shew_3160	0.17	+0.8
3,761,469	+		Shew_3160	0.17	-0.2
3,761,470	-		Shew_3160	0.18	+0.7
3,761,470	-		Shew_3160	0.18	-0.0
3,761,470	-		Shew_3160	0.18	+0.8
3,761,470	-		Shew_3160	0.18	+0.3
3,761,470	-		Shew_3160	0.18	-0.6
3,761,476	-		Shew_3160	0.19	+0.4
3,761,476	-		Shew_3160	0.19	+0.1
3,761,476	+		Shew_3160	0.19	+0.3
3,761,487	+		Shew_3160	0.21	+0.2
3,761,494	+		Shew_3160	0.22	+0.4
3,761,495	-		Shew_3160	0.23	+0.8
3,761,499	-		Shew_3160	0.24	-0.1
3,761,506	+		Shew_3160	0.25	+0.3
3,761,514	-		Shew_3160	0.27	+0.1
3,761,514	-		Shew_3160	0.27	-0.2
3,761,514	-		Shew_3160	0.27	-0.2
3,761,514	-		Shew_3160	0.27	+1.2
3,761,517	-		Shew_3160	0.27	+0.3
3,761,555	+		Shew_3160	0.35	+0.3
3,761,555	+		Shew_3160	0.35	-0.3
3,761,558	-		Shew_3160	0.36	+0.2
3,761,655	-		Shew_3160	0.55	-0.8
3,761,657	-		Shew_3160	0.56	+0.3
3,761,657	-		Shew_3160	0.56	+0.1
3,761,660	-		Shew_3160	0.56	+0.5
3,761,690	+		Shew_3160	0.63	+0.6
3,761,698	-		Shew_3160	0.64	-0.1
3,761,705	+		Shew_3160	0.66	-0.1
3,761,705	+		Shew_3160	0.66	+0.5
3,761,705	+		Shew_3160	0.66	+0.1
3,761,705	+		Shew_3160	0.66	+0.1
3,761,705	+		Shew_3160	0.66	-0.0
3,761,705	+		Shew_3160	0.66	+0.3
3,761,705	+		Shew_3160	0.66	+0.1
3,761,705	+		Shew_3160	0.66	+0.2
3,761,705	+		Shew_3160	0.66	+0.3
3,761,705	+		Shew_3160	0.66	+0.4
3,761,705	+		Shew_3160	0.66	+0.7
3,761,705	+		Shew_3160	0.66	+0.0
3,761,713	-		Shew_3160	0.67	+0.3
3,761,713	-		Shew_3160	0.67	+0.2
3,761,713	-		Shew_3160	0.67	+0.3
3,761,713	-		Shew_3160	0.67	-0.0
3,761,713	-		Shew_3160	0.67	+0.0
3,761,713	-		Shew_3160	0.67	-1.6
3,761,716	+		Shew_3160	0.68	+0.1
3,761,716	+		Shew_3160	0.68	+0.1
3,761,716	+		Shew_3160	0.68	+0.1
3,761,718	+		Shew_3160	0.68	+0.2
3,761,718	+		Shew_3160	0.68	-0.3
3,761,718	+		Shew_3160	0.68	+0.1
3,761,718	+		Shew_3160	0.68	+0.7
3,761,718	-		Shew_3160	0.68	+0.4
3,761,718	+		Shew_3160	0.68	-0.4
3,761,718	+		Shew_3160	0.68	-0.0
3,761,718	+		Shew_3160	0.68	+0.3
3,761,718	+		Shew_3160	0.68	+0.3
3,761,718	+		Shew_3160	0.68	+0.1
3,761,718	+		Shew_3160	0.68	+1.0
3,761,718	+		Shew_3160	0.68	+0.0
3,761,718	+		Shew_3160	0.68	+0.2
3,761,718	+		Shew_3160	0.68	-0.1
3,761,718	+		Shew_3160	0.68	-0.6
3,761,718	-		Shew_3160	0.68	-0.1
3,761,718	+		Shew_3160	0.68	+1.2
3,761,718	-		Shew_3160	0.68	-0.5
3,761,718	+		Shew_3160	0.68	-0.6
3,761,718	+		Shew_3160	0.68	+0.8
3,761,718	+		Shew_3160	0.68	-1.0
3,761,718	+		Shew_3160	0.68	-0.6
3,761,718	-		Shew_3160	0.68	-0.2
3,761,718	+		Shew_3160	0.68	+1.0
3,761,718	+		Shew_3160	0.68	-1.5
3,761,718	+		Shew_3160	0.68	-0.2
3,761,718	-		Shew_3160	0.68	+0.9
3,761,718	+		Shew_3160	0.68	+0.0
3,761,718	+		Shew_3160	0.68	+1.4
3,761,718	+		Shew_3160	0.68	+0.9
3,761,718	+		Shew_3160	0.68	-0.2
3,761,726	-		Shew_3160	0.70	+0.2
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	+0.4
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	-0.3
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	-1.4
3,761,726	-		Shew_3160	0.70	+0.3
3,761,726	-		Shew_3160	0.70	+1.0
3,761,726	-		Shew_3160	0.70	-1.1
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	+0.2
3,761,726	-		Shew_3160	0.70	-0.2
3,761,726	-		Shew_3160	0.70	+0.4
3,761,726	-		Shew_3160	0.70	+0.4
3,761,726	-		Shew_3160	0.70	-0.5
3,761,726	-		Shew_3160	0.70	-0.1
3,761,726	-		Shew_3160	0.70	-0.1
3,761,726	-		Shew_3160	0.70	+0.3
3,761,726	-		Shew_3160	0.70	+0.6
3,761,726	-		Shew_3160	0.70	+0.1
3,761,726	-		Shew_3160	0.70	+0.6
3,761,726	-		Shew_3160	0.70	+0.4
3,761,726	-		Shew_3160	0.70	-0.0
3,761,727	+		Shew_3160	0.70	+0.3
3,761,731	-		Shew_3160	0.71	+0.1
3,761,732	+		Shew_3160	0.71	-0.2
3,761,760	+		Shew_3160	0.77	-0.3
3,761,760	+		Shew_3160	0.77	+0.3
3,761,760	+		Shew_3160	0.77	-0.5
3,761,765	+		Shew_3160	0.78	+0.3
3,761,768	-		Shew_3160	0.79	+0.2
3,761,768	-		Shew_3160	0.79	+0.6
3,761,768	-		Shew_3160	0.79	-0.0
3,761,768	-		Shew_3160	0.79	-0.3
3,761,770	+		Shew_3160	0.79	+0.9
3,761,778	-		Shew_3160	0.81	+0.5
3,761,778	-		Shew_3160	0.81	+0.0
3,761,782	-		Shew_3160	0.81	+0.4
3,761,782	-		Shew_3160	0.81	-0.0
3,761,782	-		Shew_3160	0.81	+0.4
3,761,782	-		Shew_3160	0.81	+0.1
3,761,786	+		Shew_3160	0.82	-0.1
3,761,786	+		Shew_3160	0.82	+0.2
3,761,794	-		Shew_3160	0.84	+0.4
3,761,794	-		Shew_3160	0.84	-0.4
3,761,828	+				-0.1
3,761,836	-				+1.1
3,761,841	+				-1.3
3,761,841	+				+0.2
3,761,841	+				+0.3
3,761,841	+				+0.5
3,761,841	+				+0.6
3,761,842	+				+0.1
3,761,842	+				-0.1
3,761,849	-				+0.0
3,761,849	-				-0.5
3,761,849	-				+0.4
3,761,849	-				+0.5
3,761,849	-				+0.3
3,761,850	-				-0.1
3,761,850	-				+0.2
3,761,851	+				-0.0
3,761,860	-				-0.2
3,761,860	-				+0.4
3,761,866	+				+0.3
3,761,895	-				-0.2
3,761,900	+				-0.7
3,761,904	-				+0.2
3,761,904	-				+0.5
3,761,910	+				+0.2
3,761,910	+				-0.8
3,761,910	+				+0.3
3,761,910	+				-0.3
3,761,910	+				+0.3
3,761,910	+				-0.1
3,761,910	+				-0.0
3,761,910	+				-0.1
3,761,910	+				-0.0
3,761,918	-				-0.4
3,761,918	-				-0.1
3,761,923	+				-0.0
3,761,932	-				+0.3
3,761,955	-				+0.1
3,761,956	-				-0.7
3,761,998	+				+0.7
3,761,998	+				-0.1
3,762,010	+				-0.0
3,762,012	+				-0.2
3,762,012	+				-0.1
3,762,012	+				+0.1
3,762,012	+				+0.1
3,762,012	+				-0.1
3,762,012	+				+0.3
3,762,012	+				+0.1
3,762,015	+				+0.3
3,762,018	-				-0.0
3,762,020	+				-0.0
3,762,020	+				+0.6
3,762,020	+				+0.1
3,762,020	+				+0.3
3,762,020	+				-0.2
3,762,020	+				+0.1
3,762,020	+				-0.2
3,762,020	+				-2.1
3,762,020	+				+0.2
3,762,020	+				+0.1
3,762,020	+				+0.1
3,762,020	+				-0.3
3,762,020	+				+0.2
3,762,020	+				-0.1
3,762,020	+				+0.7
3,762,020	+				-0.0
3,762,020	+				-0.1
3,762,020	+				-0.1
3,762,020	+				-0.4
3,762,020	+				+0.1
3,762,020	+				-0.2
3,762,021	+				+0.1
3,762,021	+				+0.2
3,762,021	+				+0.1
3,762,021	+				+0.3
3,762,021	+				-0.1
3,762,021	+				+0.5
3,762,021	+				+0.3
3,762,021	+				+0.4
3,762,021	+				+0.2
3,762,026	+				-0.8
3,762,026	+				-0.7
3,762,026	+				+0.0
3,762,026	+				+0.5
3,762,028	-				-0.3
3,762,028	-				+0.1
3,762,028	-				-0.1
3,762,028	-				+0.1
3,762,028	-				+0.7
3,762,028	-				-0.8
3,762,028	-				+0.9
3,762,028	+				+0.2
3,762,028	+				-0.5
3,762,028	-				+0.2
3,762,028	-				-0.3
3,762,028	-				-0.1
3,762,028	+				-0.1
3,762,028	-				+0.1
3,762,028	-				-0.2
3,762,028	-				+0.1
3,762,028	-				+0.1
3,762,028	-				+3.2
3,762,028	-				-0.2
3,762,028	-				+0.3
3,762,029	-				+0.2
3,762,029	-				-0.5
3,762,029	-				+0.2
3,762,029	-				+0.3
3,762,029	-				+0.2
3,762,029	-				-0.1
3,762,029	-				+0.6
3,762,029	-				-1.7
3,762,031	+				+0.8
3,762,032	-				-0.0
3,762,032	-				-0.0
3,762,032	-				-0.2
3,762,034	-				-0.4
3,762,036	+				-0.2
3,762,036	+				+0.2
3,762,036	+				+0.3
3,762,043	+				+0.9
3,762,043	+				-0.5
3,762,043	+				-0.1
3,762,043	-				+0.0
3,762,043	+				+0.1
3,762,043	+				+0.1
3,762,043	+				+0.2
3,762,044	-				-0.0
3,762,044	-				-0.5
3,762,051	-				+0.0
3,762,051	-				+2.5
3,762,051	-				-0.1
3,762,051	-				+0.2
3,762,051	-				-0.4
3,762,077	-				+0.9
3,762,082	+				-0.2
3,762,155	+		Shew_3161	0.16	+0.5
3,762,163	+		Shew_3161	0.16	+0.2
3,762,173	+		Shew_3161	0.17	+1.2
3,762,181	-		Shew_3161	0.18	-0.0
3,762,181	-		Shew_3161	0.18	+0.1
3,762,189	-		Shew_3161	0.19	-0.0
3,762,286	-		Shew_3161	0.29	+0.9
3,762,301	+		Shew_3161	0.31	-0.4
3,762,314	-		Shew_3161	0.32	+0.1
3,762,363	+		Shew_3161	0.37	+0.4
3,762,448	+		Shew_3161	0.46	+0.2
3,762,456	-		Shew_3161	0.47	-0.2
3,762,456	-		Shew_3161	0.47	+0.0
3,762,475	-		Shew_3161	0.49	-0.2
3,762,551	-		Shew_3161	0.57	+0.2
3,762,565	-		Shew_3161	0.59	-0.1
3,762,578	+		Shew_3161	0.60	+0.5
3,762,586	-		Shew_3161	0.61	+0.3