Strain Fitness in Shewanella loihica PV-4 around Shew_0985

Experiment: L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0984 and Shew_0985 are separated by 272 nucleotides Shew_0984: Shew_0984 - beta-lactamase (RefSeq), at 1,134,636 to 1,135,988 _0984 Shew_0985: Shew_0985 - phospholipase D/transphosphatidylase (RefSeq), at 1,136,261 to 1,138,042 _0985 Position (kb) 1136 1137 1138 1139Strain fitness (log2 ratio) -1 0 1 2 3at 1135.294 kb on + strand, within Shew_0984at 1135.322 kb on + strand, within Shew_0984at 1135.368 kb on - strand, within Shew_0984at 1135.368 kb on - strand, within Shew_0984at 1135.624 kb on + strand, within Shew_0984at 1135.624 kb on + strand, within Shew_0984at 1135.624 kb on + strand, within Shew_0984at 1135.632 kb on - strand, within Shew_0984at 1135.932 kb on + strandat 1135.989 kb on - strandat 1136.010 kb on + strandat 1136.018 kb on - strandat 1136.020 kb on + strandat 1136.169 kb on + strandat 1136.241 kb on + strandat 1136.241 kb on + strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.249 kb on - strandat 1136.331 kb on + strandat 1136.331 kb on + strandat 1136.331 kb on + strandat 1136.331 kb on + strandat 1136.331 kb on + strandat 1136.339 kb on - strandat 1136.344 kb on - strandat 1136.363 kb on + strandat 1136.412 kb on - strandat 1136.487 kb on - strand, within Shew_0985at 1136.487 kb on - strand, within Shew_0985at 1136.488 kb on + strand, within Shew_0985at 1136.498 kb on + strand, within Shew_0985at 1136.513 kb on + strand, within Shew_0985at 1136.513 kb on + strand, within Shew_0985at 1136.513 kb on + strand, within Shew_0985at 1136.521 kb on - strand, within Shew_0985at 1136.521 kb on - strand, within Shew_0985at 1136.621 kb on + strand, within Shew_0985at 1136.659 kb on + strand, within Shew_0985at 1136.663 kb on + strand, within Shew_0985at 1136.665 kb on + strand, within Shew_0985at 1136.666 kb on - strand, within Shew_0985at 1136.667 kb on - strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.673 kb on + strand, within Shew_0985at 1136.679 kb on - strand, within Shew_0985at 1136.681 kb on - strand, within Shew_0985at 1136.681 kb on - strand, within Shew_0985at 1136.681 kb on - strand, within Shew_0985at 1136.682 kb on + strand, within Shew_0985at 1136.688 kb on + strand, within Shew_0985at 1136.712 kb on + strand, within Shew_0985at 1136.712 kb on + strand, within Shew_0985at 1136.712 kb on + strand, within Shew_0985at 1136.712 kb on + strand, within Shew_0985at 1136.714 kb on + strand, within Shew_0985at 1136.720 kb on - strand, within Shew_0985at 1136.720 kb on - strand, within Shew_0985at 1136.720 kb on - strand, within Shew_0985at 1136.773 kb on + strand, within Shew_0985at 1136.773 kb on + strand, within Shew_0985at 1136.781 kb on - strand, within Shew_0985at 1136.786 kb on + strand, within Shew_0985at 1136.941 kb on - strand, within Shew_0985at 1136.990 kb on + strand, within Shew_0985at 1137.046 kb on + strand, within Shew_0985at 1137.054 kb on - strand, within Shew_0985at 1137.056 kb on + strand, within Shew_0985at 1137.095 kb on + strand, within Shew_0985at 1137.095 kb on + strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.103 kb on - strand, within Shew_0985at 1137.170 kb on - strand, within Shew_0985at 1137.290 kb on - strand, within Shew_0985at 1137.328 kb on - strand, within Shew_0985at 1137.330 kb on - strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.375 kb on + strand, within Shew_0985at 1137.377 kb on + strand, within Shew_0985at 1137.383 kb on - strand, within Shew_0985at 1137.411 kb on - strand, within Shew_0985at 1137.411 kb on - strand, within Shew_0985at 1137.411 kb on + strand, within Shew_0985at 1137.411 kb on + strand, within Shew_0985at 1137.416 kb on + strand, within Shew_0985at 1137.417 kb on - strand, within Shew_0985at 1137.437 kb on + strand, within Shew_0985at 1137.444 kb on + strand, within Shew_0985at 1137.454 kb on + strand, within Shew_0985at 1137.462 kb on - strand, within Shew_0985at 1137.467 kb on - strand, within Shew_0985at 1137.508 kb on - strand, within Shew_0985at 1137.508 kb on - strand, within Shew_0985at 1137.541 kb on + strand, within Shew_0985at 1137.568 kb on - strand, within Shew_0985at 1137.570 kb on + strand, within Shew_0985at 1137.570 kb on + strand, within Shew_0985at 1137.570 kb on + strand, within Shew_0985at 1137.570 kb on + strand, within Shew_0985at 1137.570 kb on + strand, within Shew_0985at 1137.578 kb on - strand, within Shew_0985at 1137.578 kb on - strand, within Shew_0985at 1137.578 kb on - strand, within Shew_0985at 1137.578 kb on - strand, within Shew_0985at 1137.592 kb on - strand, within Shew_0985at 1137.592 kb on - strand, within Shew_0985at 1137.593 kb on - strand, within Shew_0985at 1137.694 kb on + strand, within Shew_0985at 1137.700 kb on + strand, within Shew_0985at 1137.702 kb on - strand, within Shew_0985at 1137.708 kb on - strand, within Shew_0985at 1137.713 kb on + strand, within Shew_0985at 1137.716 kb on - strand, within Shew_0985at 1137.721 kb on - strand, within Shew_0985at 1137.721 kb on - strand, within Shew_0985at 1137.852 kb on - strand, within Shew_0985at 1137.857 kb on + strand, within Shew_0985at 1137.866 kb on - strandat 1137.921 kb on - strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.939 kb on + strandat 1137.947 kb on - strandat 1137.947 kb on - strandat 1137.947 kb on - strandat 1137.947 kb on - strandat 1137.947 kb on - strandat 1137.963 kb on + strandat 1137.963 kb on + strandat 1138.047 kb on + strandat 1138.172 kb on + strandat 1138.274 kb on + strandat 1138.814 kb on - strandat 1138.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
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1,135,294 + Shew_0984 0.49 +0.1
1,135,322 + Shew_0984 0.51 -0.3
1,135,368 - Shew_0984 0.54 +2.0
1,135,368 - Shew_0984 0.54 +0.7
1,135,624 + Shew_0984 0.73 +1.4
1,135,624 + Shew_0984 0.73 +0.2
1,135,624 + Shew_0984 0.73 +0.1
1,135,632 - Shew_0984 0.74 +0.3
1,135,932 + +0.2
1,135,989 - +1.0
1,136,010 + +0.1
1,136,018 - -0.2
1,136,020 + +0.7
1,136,169 + -0.6
1,136,241 + +0.6
1,136,241 + +0.2
1,136,249 - -0.3
1,136,249 - -0.2
1,136,249 - +0.1
1,136,249 - -0.2
1,136,249 - +0.3
1,136,249 - -0.6
1,136,249 - -0.1
1,136,249 - -0.0
1,136,249 - +0.7
1,136,331 + -0.3
1,136,331 + +0.6
1,136,331 + -0.6
1,136,331 + +0.1
1,136,331 + +0.4
1,136,339 - +0.4
1,136,344 - +0.1
1,136,363 + +0.4
1,136,412 - +0.1
1,136,487 - Shew_0985 0.13 +0.1
1,136,487 - Shew_0985 0.13 -0.3
1,136,488 + Shew_0985 0.13 +0.3
1,136,498 + Shew_0985 0.13 -0.2
1,136,513 + Shew_0985 0.14 -0.2
1,136,513 + Shew_0985 0.14 +0.1
1,136,513 + Shew_0985 0.14 +0.3
1,136,521 - Shew_0985 0.15 +0.7
1,136,521 - Shew_0985 0.15 -1.1
1,136,621 + Shew_0985 0.20 +0.7
1,136,659 + Shew_0985 0.22 +0.3
1,136,663 + Shew_0985 0.23 +1.1
1,136,665 + Shew_0985 0.23 -0.7
1,136,666 - Shew_0985 0.23 -0.1
1,136,667 - Shew_0985 0.23 +0.5
1,136,673 + Shew_0985 0.23 +0.0
1,136,673 + Shew_0985 0.23 +0.6
1,136,673 + Shew_0985 0.23 -0.3
1,136,673 + Shew_0985 0.23 -0.2
1,136,673 + Shew_0985 0.23 +0.2
1,136,673 + Shew_0985 0.23 +0.4
1,136,679 - Shew_0985 0.23 +1.0
1,136,681 - Shew_0985 0.24 +0.8
1,136,681 - Shew_0985 0.24 +0.2
1,136,681 - Shew_0985 0.24 +0.1
1,136,682 + Shew_0985 0.24 -0.0
1,136,688 + Shew_0985 0.24 +0.0
1,136,712 + Shew_0985 0.25 +0.6
1,136,712 + Shew_0985 0.25 +0.2
1,136,712 + Shew_0985 0.25 +0.5
1,136,712 + Shew_0985 0.25 +0.2
1,136,714 + Shew_0985 0.25 +0.4
1,136,720 - Shew_0985 0.26 +0.1
1,136,720 - Shew_0985 0.26 +0.1
1,136,720 - Shew_0985 0.26 -0.3
1,136,773 + Shew_0985 0.29 +1.1
1,136,773 + Shew_0985 0.29 +0.4
1,136,781 - Shew_0985 0.29 +0.0
1,136,786 + Shew_0985 0.29 -0.0
1,136,941 - Shew_0985 0.38 +0.2
1,136,990 + Shew_0985 0.41 -0.1
1,137,046 + Shew_0985 0.44 +0.2
1,137,054 - Shew_0985 0.45 +0.3
1,137,056 + Shew_0985 0.45 -0.1
1,137,095 + Shew_0985 0.47 +0.1
1,137,095 + Shew_0985 0.47 +0.2
1,137,103 - Shew_0985 0.47 +0.2
1,137,103 - Shew_0985 0.47 +0.3
1,137,103 - Shew_0985 0.47 +0.6
1,137,103 - Shew_0985 0.47 -0.9
1,137,103 - Shew_0985 0.47 +0.4
1,137,103 - Shew_0985 0.47 +0.3
1,137,170 - Shew_0985 0.51 +0.3
1,137,290 - Shew_0985 0.58 +0.2
1,137,328 - Shew_0985 0.60 +0.3
1,137,330 - Shew_0985 0.60 +0.6
1,137,375 + Shew_0985 0.63 +0.3
1,137,375 + Shew_0985 0.63 +0.2
1,137,375 + Shew_0985 0.63 -0.2
1,137,375 + Shew_0985 0.63 -0.1
1,137,375 + Shew_0985 0.63 +0.2
1,137,375 + Shew_0985 0.63 -0.2
1,137,375 + Shew_0985 0.63 +0.0
1,137,377 + Shew_0985 0.63 +0.4
1,137,383 - Shew_0985 0.63 -0.1
1,137,411 - Shew_0985 0.65 +0.2
1,137,411 - Shew_0985 0.65 +0.7
1,137,411 + Shew_0985 0.65 +0.1
1,137,411 + Shew_0985 0.65 +0.2
1,137,416 + Shew_0985 0.65 +0.4
1,137,417 - Shew_0985 0.65 +0.2
1,137,437 + Shew_0985 0.66 +1.2
1,137,444 + Shew_0985 0.66 +0.0
1,137,454 + Shew_0985 0.67 +0.2
1,137,462 - Shew_0985 0.67 +0.6
1,137,467 - Shew_0985 0.68 +0.1
1,137,508 - Shew_0985 0.70 +1.0
1,137,508 - Shew_0985 0.70 +1.1
1,137,541 + Shew_0985 0.72 -0.1
1,137,568 - Shew_0985 0.73 +0.5
1,137,570 + Shew_0985 0.73 +0.3
1,137,570 + Shew_0985 0.73 -0.1
1,137,570 + Shew_0985 0.73 +0.1
1,137,570 + Shew_0985 0.73 -0.1
1,137,570 + Shew_0985 0.73 +0.2
1,137,578 - Shew_0985 0.74 -0.0
1,137,578 - Shew_0985 0.74 +0.5
1,137,578 - Shew_0985 0.74 +0.2
1,137,578 - Shew_0985 0.74 +1.3
1,137,592 - Shew_0985 0.75 -0.0
1,137,592 - Shew_0985 0.75 +0.4
1,137,593 - Shew_0985 0.75 +0.0
1,137,694 + Shew_0985 0.80 -0.2
1,137,700 + Shew_0985 0.81 +0.0
1,137,702 - Shew_0985 0.81 +0.2
1,137,708 - Shew_0985 0.81 +0.3
1,137,713 + Shew_0985 0.81 -0.1
1,137,716 - Shew_0985 0.82 +0.1
1,137,721 - Shew_0985 0.82 -0.2
1,137,721 - Shew_0985 0.82 +0.6
1,137,852 - Shew_0985 0.89 -0.2
1,137,857 + Shew_0985 0.90 +0.4
1,137,866 - +0.5
1,137,921 - +0.2
1,137,939 + -0.1
1,137,939 + +3.5
1,137,939 + -0.4
1,137,939 + +0.0
1,137,939 + -0.4
1,137,939 + +0.1
1,137,939 + +0.1
1,137,939 + +0.0
1,137,939 + +0.5
1,137,939 + +0.3
1,137,947 - +0.1
1,137,947 - +0.3
1,137,947 - -0.0
1,137,947 - +0.0
1,137,947 - +0.9
1,137,963 + -0.1
1,137,963 + +0.3
1,138,047 + +0.4
1,138,172 + -0.3
1,138,274 + +0.6
1,138,814 - -0.1
1,138,988 - -0.3

Or see this region's nucleotide sequence