Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3197

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3195 and Dshi_3196 overlap by 35 nucleotidesDshi_3196 and Dshi_3197 overlap by 4 nucleotidesDshi_3197 and Dshi_3198 overlap by 4 nucleotidesDshi_3198 and Dshi_3199 are separated by 4 nucleotides Dshi_3195: Dshi_3195 - periplasmic copper-binding (RefSeq), at 3,360,074 to 3,361,411 _3195 Dshi_3196: Dshi_3196 - ABC transporter related (RefSeq), at 3,361,377 to 3,362,273 _3196 Dshi_3197: Dshi_3197 - nitrous oxide maturation protein NosY (RefSeq), at 3,362,270 to 3,363,094 _3197 Dshi_3198: Dshi_3198 - NosL family protein (RefSeq), at 3,363,091 to 3,363,660 _3198 Dshi_3199: Dshi_3199 - ApbE family lipoprotein (RefSeq), at 3,363,665 to 3,364,573 _3199 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3361.306 kb on - strandat 3361.312 kb on - strandat 3361.356 kb on - strandat 3361.378 kb on - strandat 3361.478 kb on - strand, within Dshi_3196at 3361.504 kb on + strand, within Dshi_3196at 3361.522 kb on - strand, within Dshi_3196at 3361.522 kb on - strand, within Dshi_3196at 3361.573 kb on - strand, within Dshi_3196at 3361.651 kb on + strand, within Dshi_3196at 3361.659 kb on - strand, within Dshi_3196at 3361.672 kb on + strand, within Dshi_3196at 3361.729 kb on + strand, within Dshi_3196at 3361.731 kb on + strand, within Dshi_3196at 3361.846 kb on + strand, within Dshi_3196at 3361.910 kb on + strand, within Dshi_3196at 3361.928 kb on - strand, within Dshi_3196at 3362.002 kb on - strand, within Dshi_3196at 3362.192 kb on + strandat 3362.511 kb on + strand, within Dshi_3197at 3362.531 kb on - strand, within Dshi_3197at 3362.538 kb on - strand, within Dshi_3197at 3362.618 kb on - strand, within Dshi_3197at 3362.621 kb on + strand, within Dshi_3197at 3362.628 kb on - strand, within Dshi_3197at 3362.719 kb on + strand, within Dshi_3197at 3362.755 kb on - strand, within Dshi_3197at 3362.898 kb on + strand, within Dshi_3197at 3362.928 kb on + strand, within Dshi_3197at 3362.937 kb on + strand, within Dshi_3197at 3363.017 kb on + strandat 3363.037 kb on - strandat 3363.037 kb on - strandat 3363.097 kb on + strandat 3363.187 kb on - strand, within Dshi_3198at 3363.207 kb on + strand, within Dshi_3198at 3363.238 kb on + strand, within Dshi_3198at 3363.350 kb on + strand, within Dshi_3198at 3363.437 kb on - strand, within Dshi_3198at 3363.494 kb on - strand, within Dshi_3198at 3363.588 kb on - strand, within Dshi_3198at 3363.621 kb on - strandat 3363.691 kb on - strandat 3363.691 kb on - strandat 3363.858 kb on + strand, within Dshi_3199at 3363.972 kb on + strand, within Dshi_3199at 3364.054 kb on - strand, within Dshi_3199at 3364.070 kb on + strand, within Dshi_3199at 3364.089 kb on + strand, within Dshi_3199

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,361,306 - +1.1
3,361,312 - -0.8
3,361,356 - -0.3
3,361,378 - +1.7
3,361,478 - Dshi_3196 0.11 -1.9
3,361,504 + Dshi_3196 0.14 -0.8
3,361,522 - Dshi_3196 0.16 +0.1
3,361,522 - Dshi_3196 0.16 -0.7
3,361,573 - Dshi_3196 0.22 +0.1
3,361,651 + Dshi_3196 0.31 +0.1
3,361,659 - Dshi_3196 0.31 -0.5
3,361,672 + Dshi_3196 0.33 -0.0
3,361,729 + Dshi_3196 0.39 -0.4
3,361,731 + Dshi_3196 0.39 -0.3
3,361,846 + Dshi_3196 0.52 +0.1
3,361,910 + Dshi_3196 0.59 +1.2
3,361,928 - Dshi_3196 0.61 +1.3
3,362,002 - Dshi_3196 0.70 -0.3
3,362,192 + -1.0
3,362,511 + Dshi_3197 0.29 +0.7
3,362,531 - Dshi_3197 0.32 +1.1
3,362,538 - Dshi_3197 0.32 +0.4
3,362,618 - Dshi_3197 0.42 +0.8
3,362,621 + Dshi_3197 0.43 +1.1
3,362,628 - Dshi_3197 0.43 +0.5
3,362,719 + Dshi_3197 0.54 +0.8
3,362,755 - Dshi_3197 0.59 -1.7
3,362,898 + Dshi_3197 0.76 -1.2
3,362,928 + Dshi_3197 0.80 -0.1
3,362,937 + Dshi_3197 0.81 -0.9
3,363,017 + -1.2
3,363,037 - -0.7
3,363,037 - -0.3
3,363,097 + -0.1
3,363,187 - Dshi_3198 0.17 -0.2
3,363,207 + Dshi_3198 0.20 +0.1
3,363,238 + Dshi_3198 0.26 -0.2
3,363,350 + Dshi_3198 0.45 -0.9
3,363,437 - Dshi_3198 0.61 +0.4
3,363,494 - Dshi_3198 0.71 +0.6
3,363,588 - Dshi_3198 0.87 -0.4
3,363,621 - +0.5
3,363,691 - -0.7
3,363,691 - +0.1
3,363,858 + Dshi_3199 0.21 +0.1
3,363,972 + Dshi_3199 0.34 +0.8
3,364,054 - Dshi_3199 0.43 -0.6
3,364,070 + Dshi_3199 0.45 -0.2
3,364,089 + Dshi_3199 0.47 +1.1

Or see this region's nucleotide sequence