Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2851

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2850 and Dshi_2851 are separated by 49 nucleotidesDshi_2851 and Dshi_2852 are separated by 102 nucleotides Dshi_2850: Dshi_2850 - AAA ATPase (RefSeq), at 3,007,134 to 3,008,669 _2850 Dshi_2851: Dshi_2851 - autoinducer synthesis protein (RefSeq), at 3,008,719 to 3,009,339 _2851 Dshi_2852: Dshi_2852 - transcriptional regulator, LuxR family (RefSeq), at 3,009,442 to 3,010,152 _2852 Position (kb) 3008 3009 3010Strain fitness (log2 ratio) -1 0 1 2at 3007.929 kb on + strand, within Dshi_2850at 3007.970 kb on - strand, within Dshi_2850at 3007.976 kb on + strand, within Dshi_2850at 3008.021 kb on + strandat 3008.101 kb on - strand, within Dshi_2850at 3008.360 kb on + strand, within Dshi_2850at 3008.485 kb on + strand, within Dshi_2850at 3008.586 kb on - strandat 3008.664 kb on - strandat 3008.724 kb on - strandat 3008.777 kb on - strandat 3008.792 kb on + strand, within Dshi_2851at 3008.835 kb on - strand, within Dshi_2851at 3008.854 kb on - strand, within Dshi_2851at 3008.957 kb on - strand, within Dshi_2851at 3008.959 kb on - strand, within Dshi_2851at 3008.959 kb on - strand, within Dshi_2851at 3009.046 kb on + strand, within Dshi_2851at 3009.069 kb on - strand, within Dshi_2851at 3009.069 kb on - strand, within Dshi_2851at 3009.111 kb on + strand, within Dshi_2851at 3009.116 kb on + strand, within Dshi_2851at 3009.119 kb on - strand, within Dshi_2851at 3009.251 kb on + strand, within Dshi_2851at 3009.305 kb on + strandat 3009.313 kb on - strandat 3009.313 kb on - strandat 3009.342 kb on - strandat 3009.534 kb on + strand, within Dshi_2852at 3009.802 kb on + strand, within Dshi_2852at 3009.859 kb on + strand, within Dshi_2852at 3009.891 kb on + strand, within Dshi_2852at 3009.923 kb on - strand, within Dshi_2852at 3009.995 kb on - strand, within Dshi_2852at 3010.002 kb on - strand, within Dshi_2852at 3010.023 kb on + strand, within Dshi_2852at 3010.079 kb on - strand, within Dshi_2852at 3010.135 kb on + strandat 3010.142 kb on - strandat 3010.164 kb on + strandat 3010.164 kb on + strandat 3010.164 kb on + strandat 3010.164 kb on + strandat 3010.171 kb on + strandat 3010.171 kb on + strandat 3010.172 kb on - strandat 3010.172 kb on - strandat 3010.172 kb on - strandat 3010.172 kb on - strandat 3010.172 kb on - strandat 3010.172 kb on - strandat 3010.177 kb on + strandat 3010.245 kb on + strandat 3010.279 kb on - strandat 3010.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,007,929 + Dshi_2850 0.52 -0.4
3,007,970 - Dshi_2850 0.54 -1.3
3,007,976 + Dshi_2850 0.55 +0.1
3,008,021 + -0.9
3,008,101 - Dshi_2850 0.63 -0.5
3,008,360 + Dshi_2850 0.80 -0.2
3,008,485 + Dshi_2850 0.88 -1.5
3,008,586 - -0.7
3,008,664 - -0.1
3,008,724 - +0.1
3,008,777 - +0.3
3,008,792 + Dshi_2851 0.12 -0.1
3,008,835 - Dshi_2851 0.19 -0.8
3,008,854 - Dshi_2851 0.22 -0.0
3,008,957 - Dshi_2851 0.38 -0.7
3,008,959 - Dshi_2851 0.39 +0.0
3,008,959 - Dshi_2851 0.39 +0.7
3,009,046 + Dshi_2851 0.53 +0.6
3,009,069 - Dshi_2851 0.56 -0.6
3,009,069 - Dshi_2851 0.56 -0.1
3,009,111 + Dshi_2851 0.63 -0.2
3,009,116 + Dshi_2851 0.64 +1.0
3,009,119 - Dshi_2851 0.64 -0.9
3,009,251 + Dshi_2851 0.86 +0.0
3,009,305 + +0.3
3,009,313 - +0.8
3,009,313 - +0.7
3,009,342 - -1.0
3,009,534 + Dshi_2852 0.13 +1.2
3,009,802 + Dshi_2852 0.51 +0.3
3,009,859 + Dshi_2852 0.59 +0.2
3,009,891 + Dshi_2852 0.63 +1.1
3,009,923 - Dshi_2852 0.68 +0.1
3,009,995 - Dshi_2852 0.78 +0.7
3,010,002 - Dshi_2852 0.79 +0.8
3,010,023 + Dshi_2852 0.82 +2.0
3,010,079 - Dshi_2852 0.90 +0.7
3,010,135 + +0.8
3,010,142 - +0.2
3,010,164 + +0.2
3,010,164 + -0.4
3,010,164 + +1.3
3,010,164 + +0.8
3,010,171 + +1.6
3,010,171 + -0.3
3,010,172 - +1.3
3,010,172 - +0.8
3,010,172 - +0.1
3,010,172 - +1.0
3,010,172 - +0.6
3,010,172 - +0.1
3,010,177 + +0.7
3,010,245 + -0.9
3,010,279 - +1.2
3,010,286 + -0.5

Or see this region's nucleotide sequence