Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2818 and Dshi_2819 are separated by 382 nucleotides Dshi_2819 and Dshi_2820 are separated by 84 nucleotides
Dshi_2818: Dshi_2818 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 2,974,910 to 2,975,632
_2818
Dshi_2819: Dshi_2819 - hypothetical protein (RefSeq), at 2,976,015 to 2,976,293
_2819
Dshi_2820: Dshi_2820 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,976,378 to 2,977,766
_2820
Position (kb)
2976
2977 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2975.083 kb on + strand, within Dshi_2818 at 2975.280 kb on + strand, within Dshi_2818 at 2975.288 kb on - strand, within Dshi_2818 at 2975.367 kb on + strand, within Dshi_2818 at 2975.409 kb on + strand, within Dshi_2818 at 2975.412 kb on - strand, within Dshi_2818 at 2975.447 kb on - strand, within Dshi_2818 at 2975.493 kb on - strand, within Dshi_2818 at 2975.649 kb on - strand at 2975.649 kb on - strand at 2975.802 kb on + strand at 2975.872 kb on + strand at 2975.872 kb on + strand at 2975.878 kb on - strand at 2975.900 kb on - strand at 2975.974 kb on + strand at 2976.073 kb on + strand, within Dshi_2819 at 2976.084 kb on + strand, within Dshi_2819 at 2976.171 kb on - strand, within Dshi_2819 at 2976.188 kb on + strand, within Dshi_2819 at 2976.233 kb on + strand, within Dshi_2819 at 2976.295 kb on + strand at 2976.302 kb on + strand at 2976.355 kb on - strand at 2976.457 kb on + strand at 2976.457 kb on + strand at 2976.516 kb on - strand at 2976.522 kb on - strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.600 kb on + strand, within Dshi_2820 at 2976.662 kb on + strand, within Dshi_2820 at 2976.670 kb on - strand, within Dshi_2820 at 2976.734 kb on + strand, within Dshi_2820 at 2976.789 kb on + strand, within Dshi_2820 at 2976.789 kb on + strand, within Dshi_2820 at 2976.797 kb on - strand, within Dshi_2820 at 2976.878 kb on + strand, within Dshi_2820 at 2976.931 kb on + strand, within Dshi_2820 at 2976.943 kb on - strand, within Dshi_2820 at 2976.955 kb on + strand, within Dshi_2820 at 2977.028 kb on - strand, within Dshi_2820 at 2977.067 kb on + strand, within Dshi_2820 at 2977.079 kb on + strand, within Dshi_2820 at 2977.187 kb on + strand, within Dshi_2820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,975,083 + Dshi_2818 0.24 -0.5 2,975,280 + Dshi_2818 0.51 +0.1 2,975,288 - Dshi_2818 0.52 +0.5 2,975,367 + Dshi_2818 0.63 +2.1 2,975,409 + Dshi_2818 0.69 +0.3 2,975,412 - Dshi_2818 0.69 +1.0 2,975,447 - Dshi_2818 0.74 +0.2 2,975,493 - Dshi_2818 0.81 +0.1 2,975,649 - -0.1 2,975,649 - -0.3 2,975,802 + -0.7 2,975,872 + -0.9 2,975,872 + -0.2 2,975,878 - -0.9 2,975,900 - -0.4 2,975,974 + -0.3 2,976,073 + Dshi_2819 0.21 -3.8 2,976,084 + Dshi_2819 0.25 -1.5 2,976,171 - Dshi_2819 0.56 -0.5 2,976,188 + Dshi_2819 0.62 -1.5 2,976,233 + Dshi_2819 0.78 -2.0 2,976,295 + +0.4 2,976,302 + -0.5 2,976,355 - +1.1 2,976,457 + -1.2 2,976,457 + -1.4 2,976,516 - -0.9 2,976,522 - Dshi_2820 0.10 -0.9 2,976,559 + Dshi_2820 0.13 +0.5 2,976,559 + Dshi_2820 0.13 +0.3 2,976,559 + Dshi_2820 0.13 -0.1 2,976,600 + Dshi_2820 0.16 +0.5 2,976,662 + Dshi_2820 0.20 -1.8 2,976,670 - Dshi_2820 0.21 -0.4 2,976,734 + Dshi_2820 0.26 -1.4 2,976,789 + Dshi_2820 0.30 -0.2 2,976,789 + Dshi_2820 0.30 +0.4 2,976,797 - Dshi_2820 0.30 -1.7 2,976,878 + Dshi_2820 0.36 -0.3 2,976,931 + Dshi_2820 0.40 -0.4 2,976,943 - Dshi_2820 0.41 -1.1 2,976,955 + Dshi_2820 0.42 +0.8 2,977,028 - Dshi_2820 0.47 -0.4 2,977,067 + Dshi_2820 0.50 -0.9 2,977,079 + Dshi_2820 0.50 +0.1 2,977,187 + Dshi_2820 0.58 -0.6
Or see this region's nucleotide sequence