Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1612
Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Cisplatin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,674,950 | + | -1.1 | |||
1,675,029 | + | -2.2 | |||
1,675,031 | + | +0.9 | |||
1,675,082 | - | Dshi_1611 | 0.14 | -0.6 | |
1,675,096 | + | Dshi_1611 | 0.15 | -2.1 | |
1,675,104 | - | Dshi_1611 | 0.16 | -2.1 | |
1,675,124 | + | Dshi_1611 | 0.18 | -3.2 | |
1,675,214 | - | Dshi_1611 | 0.28 | -3.2 | |
1,675,501 | + | Dshi_1611 | 0.59 | -4.0 | |
1,675,506 | - | Dshi_1611 | 0.59 | -3.4 | |
1,675,509 | - | Dshi_1611 | 0.60 | -3.4 | |
1,675,585 | - | Dshi_1611 | 0.68 | -1.6 | |
1,675,690 | + | Dshi_1611 | 0.79 | -4.1 | |
1,675,884 | - | +0.1 | |||
1,675,970 | + | Dshi_1612 | 0.11 | -0.1 | |
1,675,973 | - | Dshi_1612 | 0.12 | +0.3 | |
1,675,978 | - | Dshi_1612 | 0.12 | -0.8 | |
1,676,036 | + | Dshi_1612 | 0.19 | +0.6 | |
1,676,322 | - | Dshi_1612 | 0.55 | +0.9 | |
1,676,337 | + | Dshi_1612 | 0.57 | -0.7 | |
1,676,492 | - | Dshi_1612 | 0.76 | -0.8 | |
1,676,521 | - | Dshi_1612 | 0.80 | +0.9 | |
1,676,521 | - | Dshi_1612 | 0.80 | -0.1 | |
1,676,538 | + | Dshi_1612 | 0.82 | -0.5 | |
1,676,692 | + | -0.5 | |||
1,676,692 | + | -0.8 | |||
1,676,692 | + | +0.2 | |||
1,676,693 | - | +0.4 | |||
1,676,693 | - | -0.1 | |||
1,676,700 | - | +0.3 | |||
1,676,700 | - | +1.3 | |||
1,676,732 | + | -0.9 | |||
1,676,740 | + | -0.4 | |||
1,676,748 | - | -0.3 | |||
1,676,906 | - | Dshi_1613 | 0.12 | -0.6 |
Or see this region's nucleotide sequence