Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1559 and Dshi_1560 are separated by 137 nucleotides Dshi_1560 and Dshi_1561 are separated by 132 nucleotides Dshi_1561 and Dshi_1562 are separated by 404 nucleotides
Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701
_1559
Dshi_1560: Dshi_1560 - hypothetical protein (RefSeq), at 1,621,839 to 1,622,270
_1560
Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885
_1561
Dshi_1562: Dshi_1562 - hypothetical protein (RefSeq), at 1,626,290 to 1,626,820
_1562
Position (kb)
1622
1623
1624
1625
1626 Strain fitness (log2 ratio)
-2
-1
0
1 at 1621.638 kb on - strand at 1621.646 kb on - strand at 1621.824 kb on + strand at 1622.044 kb on + strand, within Dshi_1560 at 1622.106 kb on + strand, within Dshi_1560 at 1622.358 kb on + strand at 1622.467 kb on + strand at 1622.649 kb on - strand at 1622.670 kb on - strand at 1623.664 kb on + strand, within Dshi_1561 at 1623.723 kb on + strand, within Dshi_1561 at 1624.115 kb on + strand, within Dshi_1561 at 1624.168 kb on - strand, within Dshi_1561 at 1624.385 kb on + strand, within Dshi_1561 at 1624.537 kb on + strand, within Dshi_1561 at 1624.581 kb on - strand, within Dshi_1561 at 1624.941 kb on + strand, within Dshi_1561 at 1624.947 kb on - strand, within Dshi_1561 at 1625.003 kb on + strand, within Dshi_1561 at 1625.035 kb on + strand, within Dshi_1561 at 1625.043 kb on - strand, within Dshi_1561 at 1625.370 kb on - strand, within Dshi_1561 at 1625.370 kb on - strand, within Dshi_1561 at 1625.607 kb on + strand at 1625.838 kb on + strand at 1625.915 kb on + strand at 1625.985 kb on + strand at 1626.139 kb on + strand at 1626.383 kb on - strand, within Dshi_1562 at 1626.468 kb on - strand, within Dshi_1562 at 1626.561 kb on + strand, within Dshi_1562 at 1626.584 kb on - strand, within Dshi_1562 at 1626.592 kb on + strand, within Dshi_1562 at 1626.592 kb on + strand, within Dshi_1562 at 1626.629 kb on - strand, within Dshi_1562 at 1626.659 kb on - strand, within Dshi_1562 at 1626.684 kb on + strand, within Dshi_1562 at 1626.732 kb on + strand, within Dshi_1562
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,621,638 - -0.9 1,621,646 - -1.2 1,621,824 + +1.0 1,622,044 + Dshi_1560 0.47 -0.6 1,622,106 + Dshi_1560 0.62 +0.3 1,622,358 + -1.1 1,622,467 + -0.8 1,622,649 - +0.9 1,622,670 - -0.7 1,623,664 + Dshi_1561 0.36 -1.3 1,623,723 + Dshi_1561 0.38 -0.6 1,624,115 + Dshi_1561 0.49 -0.9 1,624,168 - Dshi_1561 0.51 -1.3 1,624,385 + Dshi_1561 0.57 -2.6 1,624,537 + Dshi_1561 0.61 -1.1 1,624,581 - Dshi_1561 0.63 -0.9 1,624,941 + Dshi_1561 0.73 -1.6 1,624,947 - Dshi_1561 0.73 -1.4 1,625,003 + Dshi_1561 0.75 -0.8 1,625,035 + Dshi_1561 0.76 -0.7 1,625,043 - Dshi_1561 0.76 +0.5 1,625,370 - Dshi_1561 0.85 -0.7 1,625,370 - Dshi_1561 0.85 -1.1 1,625,607 + -1.7 1,625,838 + -1.5 1,625,915 + +0.4 1,625,985 + +0.3 1,626,139 + -0.3 1,626,383 - Dshi_1562 0.18 -1.1 1,626,468 - Dshi_1562 0.34 +0.6 1,626,561 + Dshi_1562 0.51 +0.9 1,626,584 - Dshi_1562 0.55 +0.3 1,626,592 + Dshi_1562 0.57 -0.6 1,626,592 + Dshi_1562 0.57 -1.1 1,626,629 - Dshi_1562 0.64 +0.9 1,626,659 - Dshi_1562 0.69 -0.9 1,626,684 + Dshi_1562 0.74 -0.2 1,626,732 + Dshi_1562 0.83 -0.3
Or see this region's nucleotide sequence