Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1299
Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Cisplatin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,351,996 | - | Dshi_1297 | 0.64 | -0.2 | |
1,352,049 | + | Dshi_1297 | 0.68 | -0.3 | |
1,352,116 | + | Dshi_1297 | 0.74 | +0.0 | |
1,352,158 | + | Dshi_1297 | 0.77 | +0.5 | |
1,352,223 | + | Dshi_1297 | 0.83 | -0.4 | |
1,352,250 | + | Dshi_1297 | 0.85 | -0.3 | |
1,352,273 | + | Dshi_1297 | 0.87 | -1.6 | |
1,352,278 | + | Dshi_1297 | 0.88 | -0.6 | |
1,352,334 | - | -0.5 | |||
1,352,399 | - | -1.1 | |||
1,352,511 | + | Dshi_1298 | 0.20 | +0.6 | |
1,352,599 | + | Dshi_1298 | 0.46 | +0.8 | |
1,352,616 | + | Dshi_1298 | 0.51 | +2.0 | |
1,352,621 | - | Dshi_1298 | 0.52 | +1.8 | |
1,352,828 | + | +0.2 | |||
1,352,829 | + | +1.6 | |||
1,352,855 | + | +1.7 | |||
1,352,862 | - | -1.7 | |||
1,352,884 | - | -0.8 | |||
1,353,095 | - | Dshi_1299 | 0.39 | +1.2 | |
1,353,119 | + | Dshi_1299 | 0.43 | -0.6 | |
1,353,119 | + | Dshi_1299 | 0.43 | -1.6 | |
1,353,369 | - | Dshi_1299 | 0.84 | -1.0 | |
1,353,424 | - | +0.7 | |||
1,353,674 | - | -0.3 | |||
1,353,917 | + | Dshi_1300 | 0.19 | +0.4 | |
1,353,952 | + | Dshi_1300 | 0.21 | -1.6 | |
1,354,101 | + | Dshi_1300 | 0.31 | +0.9 | |
1,354,172 | + | Dshi_1300 | 0.35 | -0.7 | |
1,354,188 | - | Dshi_1300 | 0.36 | -0.8 | |
1,354,299 | - | Dshi_1300 | 0.43 | -0.3 | |
1,354,322 | - | Dshi_1300 | 0.44 | -0.7 |
Or see this region's nucleotide sequence