Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0523

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0522 and Dshi_0523 overlap by 4 nucleotidesDshi_0523 and Dshi_0524 overlap by 4 nucleotides Dshi_0522: Dshi_0522 - transcriptional regulator, DeoR family (RefSeq), at 507,247 to 508,206 _0522 Dshi_0523: Dshi_0523 - L-fuculose-phosphate aldolase (RefSeq), at 508,203 to 508,898 _0523 Dshi_0524: Dshi_0524 - aldo/keto reductase (RefSeq), at 508,895 to 509,974 _0524 Position (kb) 508 509Strain fitness (log2 ratio) -2 -1 0 1 2at 507.310 kb on - strandat 507.310 kb on - strandat 507.319 kb on - strandat 507.361 kb on + strand, within Dshi_0522at 507.369 kb on - strand, within Dshi_0522at 507.371 kb on + strand, within Dshi_0522at 507.384 kb on - strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.401 kb on - strand, within Dshi_0522at 507.453 kb on + strand, within Dshi_0522at 507.454 kb on - strand, within Dshi_0522at 507.543 kb on + strand, within Dshi_0522at 507.789 kb on + strand, within Dshi_0522at 507.806 kb on + strand, within Dshi_0522at 507.819 kb on - strand, within Dshi_0522at 507.843 kb on + strand, within Dshi_0522at 507.879 kb on + strand, within Dshi_0522at 507.896 kb on - strand, within Dshi_0522at 507.931 kb on + strand, within Dshi_0522at 508.006 kb on - strand, within Dshi_0522at 508.049 kb on - strand, within Dshi_0522at 508.052 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.170 kb on - strandat 508.218 kb on - strandat 508.218 kb on - strandat 508.258 kb on + strandat 508.273 kb on - strand, within Dshi_0523at 508.292 kb on - strand, within Dshi_0523at 508.338 kb on - strand, within Dshi_0523at 508.343 kb on - strand, within Dshi_0523at 508.356 kb on - strand, within Dshi_0523at 508.361 kb on - strand, within Dshi_0523at 508.426 kb on - strand, within Dshi_0523at 508.433 kb on + strand, within Dshi_0523at 508.446 kb on - strand, within Dshi_0523at 508.484 kb on - strand, within Dshi_0523at 508.514 kb on - strand, within Dshi_0523at 508.541 kb on - strand, within Dshi_0523at 508.556 kb on - strand, within Dshi_0523at 508.562 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.745 kb on + strand, within Dshi_0523at 508.761 kb on - strand, within Dshi_0523at 508.770 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.789 kb on - strand, within Dshi_0523at 508.802 kb on - strand, within Dshi_0523at 508.857 kb on + strandat 508.877 kb on - strandat 508.951 kb on + strandat 508.999 kb on + strandat 509.000 kb on + strandat 509.003 kb on - strand, within Dshi_0524at 509.003 kb on - strand, within Dshi_0524at 509.007 kb on - strand, within Dshi_0524at 509.029 kb on + strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.074 kb on + strand, within Dshi_0524at 509.082 kb on - strand, within Dshi_0524at 509.138 kb on + strand, within Dshi_0524at 509.145 kb on + strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.170 kb on - strand, within Dshi_0524at 509.182 kb on - strandat 509.229 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.247 kb on - strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.352 kb on + strand, within Dshi_0524at 509.361 kb on + strand, within Dshi_0524at 509.410 kb on + strand, within Dshi_0524at 509.499 kb on + strand, within Dshi_0524at 509.514 kb on - strand, within Dshi_0524at 509.576 kb on - strand, within Dshi_0524at 509.691 kb on + strand, within Dshi_0524at 509.696 kb on + strand, within Dshi_0524at 509.860 kb on - strand, within Dshi_0524at 509.876 kb on + strandat 509.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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507,310 - +0.3
507,310 - +1.1
507,319 - +0.2
507,361 + Dshi_0522 0.12 -1.1
507,369 - Dshi_0522 0.13 -1.9
507,371 + Dshi_0522 0.13 -0.5
507,384 - Dshi_0522 0.14 +0.2
507,398 + Dshi_0522 0.16 -0.2
507,398 + Dshi_0522 0.16 -1.1
507,401 - Dshi_0522 0.16 -0.3
507,453 + Dshi_0522 0.21 -0.7
507,454 - Dshi_0522 0.22 +0.4
507,543 + Dshi_0522 0.31 -0.2
507,789 + Dshi_0522 0.56 -0.5
507,806 + Dshi_0522 0.58 +0.9
507,819 - Dshi_0522 0.60 -0.5
507,843 + Dshi_0522 0.62 -0.3
507,879 + Dshi_0522 0.66 -0.1
507,896 - Dshi_0522 0.68 -0.3
507,931 + Dshi_0522 0.71 -0.2
508,006 - Dshi_0522 0.79 +0.4
508,049 - Dshi_0522 0.84 -0.3
508,052 + Dshi_0522 0.84 -0.7
508,094 + Dshi_0522 0.88 +0.3
508,094 + Dshi_0522 0.88 -0.8
508,170 - -0.5
508,218 - -0.9
508,218 - -0.1
508,258 + -0.2
508,273 - Dshi_0523 0.10 -0.1
508,292 - Dshi_0523 0.13 -0.5
508,338 - Dshi_0523 0.19 -0.5
508,343 - Dshi_0523 0.20 -0.7
508,356 - Dshi_0523 0.22 +0.2
508,361 - Dshi_0523 0.23 -0.6
508,426 - Dshi_0523 0.32 -1.4
508,433 + Dshi_0523 0.33 +0.1
508,446 - Dshi_0523 0.35 +0.3
508,484 - Dshi_0523 0.40 -0.2
508,514 - Dshi_0523 0.45 -0.1
508,541 - Dshi_0523 0.49 -0.9
508,556 - Dshi_0523 0.51 -0.4
508,562 + Dshi_0523 0.52 -0.1
508,624 + Dshi_0523 0.60 +0.1
508,624 + Dshi_0523 0.60 +0.4
508,624 + Dshi_0523 0.60 -1.1
508,624 + Dshi_0523 0.60 +0.3
508,624 + Dshi_0523 0.60 +1.0
508,624 + Dshi_0523 0.60 +1.0
508,624 + Dshi_0523 0.60 -0.7
508,624 + Dshi_0523 0.60 -0.6
508,624 + Dshi_0523 0.60 +0.1
508,632 - Dshi_0523 0.62 -2.5
508,632 - Dshi_0523 0.62 -1.3
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 -0.8
508,632 - Dshi_0523 0.62 -1.4
508,632 - Dshi_0523 0.62 -0.4
508,632 - Dshi_0523 0.62 -0.2
508,632 - Dshi_0523 0.62 +0.3
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 -0.4
508,632 - Dshi_0523 0.62 +1.3
508,632 - Dshi_0523 0.62 -0.4
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 +0.3
508,632 - Dshi_0523 0.62 -0.2
508,632 - Dshi_0523 0.62 -0.7
508,745 + Dshi_0523 0.78 -0.6
508,761 - Dshi_0523 0.80 +0.1
508,770 - Dshi_0523 0.81 +0.2
508,788 - Dshi_0523 0.84 -0.1
508,788 - Dshi_0523 0.84 -0.2
508,789 - Dshi_0523 0.84 +0.1
508,802 - Dshi_0523 0.86 +0.7
508,857 + -0.7
508,877 - +0.7
508,951 + +0.5
508,999 + -0.7
509,000 + +0.1
509,003 - Dshi_0524 0.10 -0.2
509,003 - Dshi_0524 0.10 +0.1
509,007 - Dshi_0524 0.10 -1.2
509,029 + Dshi_0524 0.12 -0.7
509,029 - Dshi_0524 0.12 -0.5
509,029 - Dshi_0524 0.12 -0.4
509,074 + Dshi_0524 0.17 -0.9
509,082 - Dshi_0524 0.17 -0.9
509,138 + Dshi_0524 0.23 +0.3
509,145 + Dshi_0524 0.23 +0.3
509,153 - Dshi_0524 0.24 -0.2
509,153 - Dshi_0524 0.24 +0.6
509,153 - Dshi_0524 0.24 -0.2
509,170 - Dshi_0524 0.25 -0.3
509,182 - +1.1
509,229 + Dshi_0524 0.31 +0.5
509,239 + Dshi_0524 0.32 -0.8
509,239 + Dshi_0524 0.32 +1.9
509,239 + Dshi_0524 0.32 -0.9
509,247 - Dshi_0524 0.33 -0.2
509,286 + Dshi_0524 0.36 +0.8
509,286 + Dshi_0524 0.36 +0.3
509,352 + Dshi_0524 0.42 -1.4
509,361 + Dshi_0524 0.43 +0.4
509,410 + Dshi_0524 0.48 -0.8
509,499 + Dshi_0524 0.56 -0.3
509,514 - Dshi_0524 0.57 -1.2
509,576 - Dshi_0524 0.63 +0.7
509,691 + Dshi_0524 0.74 +1.5
509,696 + Dshi_0524 0.74 +0.3
509,860 - Dshi_0524 0.89 -1.5
509,876 + -1.1
509,897 + -0.6

Or see this region's nucleotide sequence