Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0520

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0519 and Dshi_0520 are separated by 151 nucleotidesDshi_0520 and Dshi_0521 overlap by 4 nucleotides Dshi_0519: Dshi_0519 - ABC transporter related (RefSeq), at 503,182 to 504,678 _0519 Dshi_0520: Dshi_0520 - 5-methylthioribose kinase (RefSeq), at 504,830 to 506,089 _0520 Dshi_0521: Dshi_0521 - eIF-2B alpha/beta/delta-related uncharacterized protein (RefSeq), at 506,086 to 507,189 _0521 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 503.891 kb on + strand, within Dshi_0519at 503.896 kb on - strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.993 kb on + strand, within Dshi_0519at 504.002 kb on - strand, within Dshi_0519at 504.014 kb on + strand, within Dshi_0519at 504.058 kb on - strand, within Dshi_0519at 504.071 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.125 kb on + strand, within Dshi_0519at 504.139 kb on - strand, within Dshi_0519at 504.140 kb on + strand, within Dshi_0519at 504.206 kb on - strand, within Dshi_0519at 504.230 kb on - strand, within Dshi_0519at 504.336 kb on + strand, within Dshi_0519at 504.344 kb on - strand, within Dshi_0519at 504.344 kb on - strand, within Dshi_0519at 504.365 kb on - strand, within Dshi_0519at 504.387 kb on + strand, within Dshi_0519at 504.387 kb on + strand, within Dshi_0519at 504.405 kb on + strand, within Dshi_0519at 504.483 kb on + strand, within Dshi_0519at 504.491 kb on - strand, within Dshi_0519at 504.589 kb on + strandat 504.589 kb on + strandat 504.597 kb on - strandat 504.632 kb on - strandat 504.642 kb on - strandat 504.642 kb on - strandat 504.679 kb on - strandat 504.704 kb on + strandat 504.709 kb on + strandat 504.712 kb on - strandat 504.767 kb on + strandat 504.784 kb on + strandat 504.789 kb on + strandat 504.789 kb on + strandat 504.791 kb on + strandat 504.791 kb on + strandat 504.797 kb on - strandat 504.868 kb on - strandat 504.876 kb on - strandat 504.883 kb on + strandat 504.883 kb on + strandat 504.891 kb on - strandat 504.891 kb on - strandat 504.891 kb on - strandat 504.910 kb on + strandat 504.910 kb on - strandat 504.979 kb on + strand, within Dshi_0520at 504.994 kb on - strand, within Dshi_0520at 505.026 kb on + strand, within Dshi_0520at 505.032 kb on - strand, within Dshi_0520at 505.048 kb on + strand, within Dshi_0520at 505.110 kb on + strand, within Dshi_0520at 505.365 kb on + strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.413 kb on - strand, within Dshi_0520at 505.425 kb on + strand, within Dshi_0520at 505.452 kb on + strand, within Dshi_0520at 505.471 kb on + strand, within Dshi_0520at 505.476 kb on + strand, within Dshi_0520at 505.496 kb on - strand, within Dshi_0520at 505.554 kb on + strand, within Dshi_0520at 505.638 kb on - strand, within Dshi_0520at 505.687 kb on + strand, within Dshi_0520at 505.696 kb on - strand, within Dshi_0520at 505.718 kb on - strand, within Dshi_0520at 505.729 kb on + strand, within Dshi_0520at 505.729 kb on + strand, within Dshi_0520at 505.734 kb on + strand, within Dshi_0520at 505.777 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.825 kb on + strand, within Dshi_0520at 505.861 kb on + strand, within Dshi_0520at 505.861 kb on + strand, within Dshi_0520at 505.875 kb on + strand, within Dshi_0520at 505.909 kb on - strand, within Dshi_0520at 505.945 kb on + strand, within Dshi_0520at 505.955 kb on + strand, within Dshi_0520at 505.963 kb on - strand, within Dshi_0520at 506.065 kb on + strandat 506.099 kb on + strandat 506.106 kb on + strandat 506.114 kb on - strandat 506.170 kb on + strandat 506.179 kb on - strandat 506.261 kb on + strand, within Dshi_0521at 506.264 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.401 kb on + strand, within Dshi_0521at 506.404 kb on - strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.420 kb on + strand, within Dshi_0521at 506.449 kb on - strand, within Dshi_0521at 506.507 kb on + strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.621 kb on + strand, within Dshi_0521at 506.624 kb on - strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.669 kb on - strand, within Dshi_0521at 506.671 kb on + strand, within Dshi_0521at 506.688 kb on + strand, within Dshi_0521at 506.690 kb on + strand, within Dshi_0521at 506.708 kb on + strand, within Dshi_0521at 506.716 kb on - strand, within Dshi_0521at 506.762 kb on - strand, within Dshi_0521at 506.791 kb on - strand, within Dshi_0521at 506.802 kb on + strand, within Dshi_0521at 506.847 kb on + strand, within Dshi_0521at 506.855 kb on - strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.888 kb on - strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.067 kb on - strand, within Dshi_0521

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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503,891 + Dshi_0519 0.47 -1.2
503,896 - Dshi_0519 0.48 -0.5
503,925 + Dshi_0519 0.50 -0.0
503,925 + Dshi_0519 0.50 -0.8
503,960 + Dshi_0519 0.52 -0.6
503,960 + Dshi_0519 0.52 -0.5
503,993 + Dshi_0519 0.54 -1.5
504,002 - Dshi_0519 0.55 +0.4
504,014 + Dshi_0519 0.56 +0.4
504,058 - Dshi_0519 0.59 +0.1
504,071 - Dshi_0519 0.59 -0.0
504,124 - Dshi_0519 0.63 -1.4
504,124 - Dshi_0519 0.63 -0.5
504,125 + Dshi_0519 0.63 -0.1
504,139 - Dshi_0519 0.64 -0.3
504,140 + Dshi_0519 0.64 -0.9
504,206 - Dshi_0519 0.68 +0.1
504,230 - Dshi_0519 0.70 +0.2
504,336 + Dshi_0519 0.77 +0.5
504,344 - Dshi_0519 0.78 -1.0
504,344 - Dshi_0519 0.78 -0.2
504,365 - Dshi_0519 0.79 -0.2
504,387 + Dshi_0519 0.80 +0.1
504,387 + Dshi_0519 0.80 -0.7
504,405 + Dshi_0519 0.82 -0.7
504,483 + Dshi_0519 0.87 +0.1
504,491 - Dshi_0519 0.87 -0.9
504,589 + +0.7
504,589 + +1.7
504,597 - -0.4
504,632 - -0.2
504,642 - +0.2
504,642 - +0.2
504,679 - -2.3
504,704 + -0.6
504,709 + +0.3
504,712 - +0.1
504,767 + +0.9
504,784 + +0.2
504,789 + -0.1
504,789 + +1.1
504,791 + -0.3
504,791 + +1.0
504,797 - +0.2
504,868 - +0.3
504,876 - -1.1
504,883 + -0.2
504,883 + -0.8
504,891 - +0.3
504,891 - -0.5
504,891 - +0.1
504,910 + -0.9
504,910 - +1.1
504,979 + Dshi_0520 0.12 +0.1
504,994 - Dshi_0520 0.13 +0.3
505,026 + Dshi_0520 0.16 +0.1
505,032 - Dshi_0520 0.16 +1.7
505,048 + Dshi_0520 0.17 +1.4
505,110 + Dshi_0520 0.22 +0.8
505,365 + Dshi_0520 0.42 +0.7
505,378 - Dshi_0520 0.43 +0.1
505,378 - Dshi_0520 0.43 -0.8
505,413 - Dshi_0520 0.46 -0.9
505,425 + Dshi_0520 0.47 +0.4
505,452 + Dshi_0520 0.49 -0.1
505,471 + Dshi_0520 0.51 -0.8
505,476 + Dshi_0520 0.51 -0.8
505,496 - Dshi_0520 0.53 +2.2
505,554 + Dshi_0520 0.57 +0.4
505,638 - Dshi_0520 0.64 +0.7
505,687 + Dshi_0520 0.68 +0.4
505,696 - Dshi_0520 0.69 +0.4
505,718 - Dshi_0520 0.70 -0.7
505,729 + Dshi_0520 0.71 -0.7
505,729 + Dshi_0520 0.71 +0.2
505,734 + Dshi_0520 0.72 +0.2
505,777 + Dshi_0520 0.75 +1.7
505,784 + Dshi_0520 0.76 -0.9
505,784 + Dshi_0520 0.76 -0.4
505,784 + Dshi_0520 0.76 -0.3
505,784 + Dshi_0520 0.76 +1.4
505,784 + Dshi_0520 0.76 +0.2
505,825 + Dshi_0520 0.79 -0.1
505,861 + Dshi_0520 0.82 +0.3
505,861 + Dshi_0520 0.82 +0.3
505,875 + Dshi_0520 0.83 +1.3
505,909 - Dshi_0520 0.86 +0.4
505,945 + Dshi_0520 0.88 +1.0
505,955 + Dshi_0520 0.89 -0.8
505,963 - Dshi_0520 0.90 +1.0
506,065 + -0.0
506,099 + +1.1
506,106 + -0.3
506,114 - +0.3
506,170 + -0.3
506,179 - -0.4
506,261 + Dshi_0521 0.16 +0.3
506,264 - Dshi_0521 0.16 +1.1
506,287 - Dshi_0521 0.18 -1.0
506,287 - Dshi_0521 0.18 -0.4
506,289 + Dshi_0521 0.18 +0.4
506,289 + Dshi_0521 0.18 +0.7
506,401 + Dshi_0521 0.29 +0.7
506,404 - Dshi_0521 0.29 -2.7
506,415 + Dshi_0521 0.30 -0.9
506,415 + Dshi_0521 0.30 +1.1
506,415 + Dshi_0521 0.30 +0.7
506,420 + Dshi_0521 0.30 -0.4
506,449 - Dshi_0521 0.33 -0.9
506,507 + Dshi_0521 0.38 +0.6
506,515 - Dshi_0521 0.39 -1.1
506,515 - Dshi_0521 0.39 -0.1
506,515 - Dshi_0521 0.39 -1.1
506,515 - Dshi_0521 0.39 -0.2
506,520 - Dshi_0521 0.39 -0.7
506,520 - Dshi_0521 0.39 -0.9
506,621 + Dshi_0521 0.48 +0.3
506,624 - Dshi_0521 0.49 +1.3
506,661 + Dshi_0521 0.52 -0.2
506,661 + Dshi_0521 0.52 -0.8
506,669 - Dshi_0521 0.53 -0.9
506,671 + Dshi_0521 0.53 -0.9
506,688 + Dshi_0521 0.55 +0.4
506,690 + Dshi_0521 0.55 +0.0
506,708 + Dshi_0521 0.56 -0.8
506,716 - Dshi_0521 0.57 -0.9
506,762 - Dshi_0521 0.61 -0.1
506,791 - Dshi_0521 0.64 -0.2
506,802 + Dshi_0521 0.65 -1.1
506,847 + Dshi_0521 0.69 -0.5
506,855 - Dshi_0521 0.70 +0.2
506,880 + Dshi_0521 0.72 +1.7
506,880 + Dshi_0521 0.72 -0.2
506,888 - Dshi_0521 0.73 +0.5
506,935 + Dshi_0521 0.77 -0.2
506,935 + Dshi_0521 0.77 +0.0
507,036 + Dshi_0521 0.86 -0.5
507,036 + Dshi_0521 0.86 -0.1
507,067 - Dshi_0521 0.89 -0.1

Or see this region's nucleotide sequence