Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0518

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0517 and Dshi_0518 are separated by 25 nucleotidesDshi_0518 and Dshi_0519 overlap by 4 nucleotides Dshi_0517: Dshi_0517 - periplasmic binding protein/LacI transcriptional regulator (RefSeq), at 501,109 to 502,149 _0517 Dshi_0518: Dshi_0518 - Monosaccharide-transporting ATPase (RefSeq), at 502,175 to 503,185 _0518 Dshi_0519: Dshi_0519 - ABC transporter related (RefSeq), at 503,182 to 504,678 _0519 Position (kb) 502 503 504Strain fitness (log2 ratio) -1 0 1 2at 501.285 kb on + strand, within Dshi_0517at 501.353 kb on - strand, within Dshi_0517at 501.368 kb on - strand, within Dshi_0517at 501.426 kb on + strand, within Dshi_0517at 501.468 kb on + strand, within Dshi_0517at 501.505 kb on + strand, within Dshi_0517at 501.505 kb on + strand, within Dshi_0517at 501.513 kb on - strand, within Dshi_0517at 501.513 kb on - strand, within Dshi_0517at 501.518 kb on - strand, within Dshi_0517at 501.541 kb on - strand, within Dshi_0517at 501.661 kb on + strand, within Dshi_0517at 501.691 kb on + strand, within Dshi_0517at 501.748 kb on - strand, within Dshi_0517at 501.794 kb on - strand, within Dshi_0517at 501.799 kb on - strand, within Dshi_0517at 501.799 kb on - strand, within Dshi_0517at 501.800 kb on + strand, within Dshi_0517at 502.015 kb on - strand, within Dshi_0517at 502.044 kb on + strand, within Dshi_0517at 502.044 kb on + strand, within Dshi_0517at 502.044 kb on + strand, within Dshi_0517at 502.044 kb on + strand, within Dshi_0517at 502.052 kb on - strandat 502.062 kb on - strandat 502.114 kb on - strandat 502.135 kb on - strandat 502.168 kb on - strandat 502.245 kb on + strandat 502.286 kb on + strand, within Dshi_0518at 502.287 kb on + strand, within Dshi_0518at 502.295 kb on - strand, within Dshi_0518at 502.346 kb on + strand, within Dshi_0518at 502.461 kb on + strand, within Dshi_0518at 502.469 kb on - strand, within Dshi_0518at 502.469 kb on - strand, within Dshi_0518at 502.542 kb on - strand, within Dshi_0518at 502.563 kb on + strand, within Dshi_0518at 502.590 kb on - strand, within Dshi_0518at 502.592 kb on + strand, within Dshi_0518at 502.689 kb on + strand, within Dshi_0518at 502.691 kb on - strand, within Dshi_0518at 502.697 kb on - strand, within Dshi_0518at 502.702 kb on - strand, within Dshi_0518at 502.734 kb on - strand, within Dshi_0518at 502.748 kb on + strandat 502.769 kb on - strand, within Dshi_0518at 502.769 kb on - strand, within Dshi_0518at 502.781 kb on + strand, within Dshi_0518at 502.789 kb on - strand, within Dshi_0518at 502.826 kb on - strand, within Dshi_0518at 502.844 kb on - strand, within Dshi_0518at 502.868 kb on - strand, within Dshi_0518at 502.895 kb on + strand, within Dshi_0518at 502.895 kb on + strand, within Dshi_0518at 503.016 kb on - strand, within Dshi_0518at 503.018 kb on + strand, within Dshi_0518at 503.029 kb on + strand, within Dshi_0518at 503.082 kb on + strand, within Dshi_0518at 503.132 kb on + strandat 503.165 kb on + strandat 503.350 kb on + strand, within Dshi_0519at 503.351 kb on - strand, within Dshi_0519at 503.367 kb on - strand, within Dshi_0519at 503.410 kb on + strand, within Dshi_0519at 503.417 kb on + strand, within Dshi_0519at 503.427 kb on - strand, within Dshi_0519at 503.434 kb on - strand, within Dshi_0519at 503.438 kb on + strand, within Dshi_0519at 503.453 kb on + strand, within Dshi_0519at 503.461 kb on - strand, within Dshi_0519at 503.537 kb on + strand, within Dshi_0519at 503.544 kb on - strand, within Dshi_0519at 503.559 kb on - strand, within Dshi_0519at 503.560 kb on + strand, within Dshi_0519at 503.570 kb on + strand, within Dshi_0519at 503.580 kb on - strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.639 kb on - strand, within Dshi_0519at 503.665 kb on - strand, within Dshi_0519at 503.669 kb on - strand, within Dshi_0519at 503.683 kb on + strand, within Dshi_0519at 503.685 kb on + strand, within Dshi_0519at 503.685 kb on + strand, within Dshi_0519at 503.746 kb on - strand, within Dshi_0519at 503.746 kb on - strand, within Dshi_0519at 503.796 kb on - strand, within Dshi_0519at 503.796 kb on - strand, within Dshi_0519at 503.891 kb on + strand, within Dshi_0519at 503.896 kb on - strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.993 kb on + strand, within Dshi_0519at 504.002 kb on - strand, within Dshi_0519at 504.014 kb on + strand, within Dshi_0519at 504.058 kb on - strand, within Dshi_0519at 504.071 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.125 kb on + strand, within Dshi_0519at 504.139 kb on - strand, within Dshi_0519at 504.140 kb on + strand, within Dshi_0519

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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501,285 + Dshi_0517 0.17 +0.7
501,353 - Dshi_0517 0.23 -0.6
501,368 - Dshi_0517 0.25 +0.7
501,426 + Dshi_0517 0.30 -0.6
501,468 + Dshi_0517 0.34 +0.9
501,505 + Dshi_0517 0.38 -0.5
501,505 + Dshi_0517 0.38 +0.3
501,513 - Dshi_0517 0.39 +1.7
501,513 - Dshi_0517 0.39 -0.0
501,518 - Dshi_0517 0.39 -0.2
501,541 - Dshi_0517 0.41 +0.4
501,661 + Dshi_0517 0.53 -1.4
501,691 + Dshi_0517 0.56 -0.1
501,748 - Dshi_0517 0.61 -0.2
501,794 - Dshi_0517 0.66 +1.4
501,799 - Dshi_0517 0.66 -0.3
501,799 - Dshi_0517 0.66 +0.2
501,800 + Dshi_0517 0.66 +0.1
502,015 - Dshi_0517 0.87 -0.0
502,044 + Dshi_0517 0.90 +0.5
502,044 + Dshi_0517 0.90 +0.7
502,044 + Dshi_0517 0.90 -0.3
502,044 + Dshi_0517 0.90 -0.7
502,052 - +0.3
502,062 - +0.1
502,114 - -0.0
502,135 - +0.4
502,168 - -0.6
502,245 + +0.1
502,286 + Dshi_0518 0.11 -0.1
502,287 + Dshi_0518 0.11 +0.1
502,295 - Dshi_0518 0.12 -0.6
502,346 + Dshi_0518 0.17 +0.2
502,461 + Dshi_0518 0.28 +0.1
502,469 - Dshi_0518 0.29 +0.1
502,469 - Dshi_0518 0.29 +0.3
502,542 - Dshi_0518 0.36 -0.3
502,563 + Dshi_0518 0.38 +0.1
502,590 - Dshi_0518 0.41 +0.4
502,592 + Dshi_0518 0.41 -0.5
502,689 + Dshi_0518 0.51 +0.2
502,691 - Dshi_0518 0.51 +1.2
502,697 - Dshi_0518 0.52 +0.8
502,702 - Dshi_0518 0.52 +0.2
502,734 - Dshi_0518 0.55 +0.0
502,748 + +0.1
502,769 - Dshi_0518 0.59 -0.5
502,769 - Dshi_0518 0.59 -0.1
502,781 + Dshi_0518 0.60 +1.1
502,789 - Dshi_0518 0.61 +0.7
502,826 - Dshi_0518 0.64 -0.5
502,844 - Dshi_0518 0.66 +0.4
502,868 - Dshi_0518 0.69 -0.4
502,895 + Dshi_0518 0.71 -0.6
502,895 + Dshi_0518 0.71 -0.2
503,016 - Dshi_0518 0.83 +0.3
503,018 + Dshi_0518 0.83 -0.4
503,029 + Dshi_0518 0.84 +0.3
503,082 + Dshi_0518 0.90 +0.5
503,132 + -0.5
503,165 + -0.0
503,350 + Dshi_0519 0.11 -1.3
503,351 - Dshi_0519 0.11 +0.6
503,367 - Dshi_0519 0.12 +1.8
503,410 + Dshi_0519 0.15 -0.9
503,417 + Dshi_0519 0.16 -0.3
503,427 - Dshi_0519 0.16 -0.2
503,434 - Dshi_0519 0.17 +0.4
503,438 + Dshi_0519 0.17 +0.2
503,453 + Dshi_0519 0.18 +0.1
503,461 - Dshi_0519 0.19 +0.0
503,537 + Dshi_0519 0.24 +0.1
503,544 - Dshi_0519 0.24 +0.1
503,559 - Dshi_0519 0.25 -0.1
503,560 + Dshi_0519 0.25 +0.5
503,570 + Dshi_0519 0.26 -0.7
503,580 - Dshi_0519 0.27 +0.5
503,609 + Dshi_0519 0.29 +0.0
503,609 + Dshi_0519 0.29 -0.5
503,609 + Dshi_0519 0.29 -0.1
503,639 - Dshi_0519 0.31 -0.1
503,665 - Dshi_0519 0.32 -1.3
503,669 - Dshi_0519 0.33 -0.2
503,683 + Dshi_0519 0.33 -0.2
503,685 + Dshi_0519 0.34 -0.8
503,685 + Dshi_0519 0.34 -0.5
503,746 - Dshi_0519 0.38 +0.2
503,746 - Dshi_0519 0.38 +0.6
503,796 - Dshi_0519 0.41 +0.1
503,796 - Dshi_0519 0.41 -1.5
503,891 + Dshi_0519 0.47 -1.2
503,896 - Dshi_0519 0.48 -0.5
503,925 + Dshi_0519 0.50 -0.0
503,925 + Dshi_0519 0.50 -0.8
503,960 + Dshi_0519 0.52 -0.6
503,960 + Dshi_0519 0.52 -0.5
503,993 + Dshi_0519 0.54 -1.5
504,002 - Dshi_0519 0.55 +0.4
504,014 + Dshi_0519 0.56 +0.4
504,058 - Dshi_0519 0.59 +0.1
504,071 - Dshi_0519 0.59 -0.0
504,124 - Dshi_0519 0.63 -1.4
504,124 - Dshi_0519 0.63 -0.5
504,125 + Dshi_0519 0.63 -0.1
504,139 - Dshi_0519 0.64 -0.3
504,140 + Dshi_0519 0.64 -0.9

Or see this region's nucleotide sequence