Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0469

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0467 and Dshi_0468 are separated by 33 nucleotidesDshi_0468 and Dshi_0469 overlap by 4 nucleotidesDshi_0469 and Dshi_0470 are separated by 63 nucleotidesDshi_0470 and Dshi_0471 are separated by 62 nucleotides Dshi_0467: Dshi_0467 - histidine kinase (RefSeq), at 452,199 to 454,475 _0467 Dshi_0468: Dshi_0468 - hypothetical protein (RefSeq), at 454,509 to 455,171 _0468 Dshi_0469: Dshi_0469 - hypothetical protein (RefSeq), at 455,168 to 455,518 _0469 Dshi_0470: Dshi_0470 - Sulphur oxidation protein SoxZ (RefSeq), at 455,582 to 456,454 _0470 Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557 _0471 Position (kb) 455 456Strain fitness (log2 ratio) -2 -1 0 1at 454.208 kb on + strand, within Dshi_0467at 454.212 kb on + strand, within Dshi_0467at 454.271 kb on + strandat 454.469 kb on + strandat 454.476 kb on + strandat 454.513 kb on + strandat 454.532 kb on + strandat 454.542 kb on + strandat 454.547 kb on + strandat 454.594 kb on + strand, within Dshi_0468at 454.612 kb on + strand, within Dshi_0468at 454.621 kb on - strand, within Dshi_0468at 454.642 kb on + strand, within Dshi_0468at 454.642 kb on + strand, within Dshi_0468at 454.676 kb on - strand, within Dshi_0468at 454.719 kb on + strand, within Dshi_0468at 454.726 kb on + strand, within Dshi_0468at 454.760 kb on - strand, within Dshi_0468at 454.798 kb on - strand, within Dshi_0468at 454.806 kb on - strand, within Dshi_0468at 454.814 kb on + strand, within Dshi_0468at 454.819 kb on + strand, within Dshi_0468at 454.880 kb on - strand, within Dshi_0468at 454.884 kb on - strand, within Dshi_0468at 454.911 kb on - strand, within Dshi_0468at 454.927 kb on + strand, within Dshi_0468at 454.984 kb on - strand, within Dshi_0468at 454.984 kb on - strand, within Dshi_0468at 455.065 kb on + strand, within Dshi_0468at 455.073 kb on - strand, within Dshi_0468at 455.073 kb on - strand, within Dshi_0468at 455.074 kb on - strand, within Dshi_0468at 455.074 kb on - strand, within Dshi_0468at 455.084 kb on - strand, within Dshi_0468at 455.084 kb on - strand, within Dshi_0468at 455.102 kb on + strand, within Dshi_0468at 455.102 kb on + strand, within Dshi_0468at 455.110 kb on - strandat 455.132 kb on - strandat 455.145 kb on - strandat 455.153 kb on + strandat 455.281 kb on - strand, within Dshi_0469at 455.287 kb on - strand, within Dshi_0469at 455.373 kb on - strand, within Dshi_0469at 455.383 kb on - strand, within Dshi_0469at 455.413 kb on + strand, within Dshi_0469at 455.421 kb on - strand, within Dshi_0469at 455.487 kb on - strandat 455.487 kb on - strandat 455.494 kb on - strandat 455.511 kb on + strandat 455.639 kb on + strandat 455.729 kb on + strand, within Dshi_0470at 455.763 kb on - strand, within Dshi_0470at 455.791 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.815 kb on + strand, within Dshi_0470at 455.865 kb on + strand, within Dshi_0470at 455.908 kb on + strand, within Dshi_0470at 455.921 kb on - strand, within Dshi_0470at 456.036 kb on - strand, within Dshi_0470at 456.043 kb on - strand, within Dshi_0470at 456.072 kb on + strand, within Dshi_0470at 456.075 kb on + strand, within Dshi_0470at 456.082 kb on - strand, within Dshi_0470at 456.093 kb on - strand, within Dshi_0470at 456.170 kb on - strand, within Dshi_0470at 456.190 kb on - strand, within Dshi_0470at 456.218 kb on - strand, within Dshi_0470at 456.225 kb on + strand, within Dshi_0470at 456.261 kb on - strand, within Dshi_0470at 456.346 kb on - strand, within Dshi_0470at 456.411 kb on + strandat 456.424 kb on - strandat 456.473 kb on + strandat 456.496 kb on + strandat 456.501 kb on + strandat 456.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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454,208 + Dshi_0467 0.88 +0.2
454,212 + Dshi_0467 0.88 -0.7
454,271 + +0.4
454,469 + -0.3
454,476 + +0.1
454,513 + +0.8
454,532 + +0.5
454,542 + -0.3
454,547 + +1.1
454,594 + Dshi_0468 0.13 +0.7
454,612 + Dshi_0468 0.16 +0.3
454,621 - Dshi_0468 0.17 -0.7
454,642 + Dshi_0468 0.20 +0.4
454,642 + Dshi_0468 0.20 -0.9
454,676 - Dshi_0468 0.25 +0.4
454,719 + Dshi_0468 0.32 +1.1
454,726 + Dshi_0468 0.33 +0.8
454,760 - Dshi_0468 0.38 +0.3
454,798 - Dshi_0468 0.44 -0.4
454,806 - Dshi_0468 0.45 +0.7
454,814 + Dshi_0468 0.46 -1.2
454,819 + Dshi_0468 0.47 +1.1
454,880 - Dshi_0468 0.56 -0.3
454,884 - Dshi_0468 0.57 -0.6
454,911 - Dshi_0468 0.61 -0.4
454,927 + Dshi_0468 0.63 -0.1
454,984 - Dshi_0468 0.72 -0.2
454,984 - Dshi_0468 0.72 -0.0
455,065 + Dshi_0468 0.84 -0.7
455,073 - Dshi_0468 0.85 +0.4
455,073 - Dshi_0468 0.85 -0.0
455,074 - Dshi_0468 0.85 +0.2
455,074 - Dshi_0468 0.85 -0.1
455,084 - Dshi_0468 0.87 -0.0
455,084 - Dshi_0468 0.87 -0.0
455,102 + Dshi_0468 0.89 -0.9
455,102 + Dshi_0468 0.89 -0.4
455,110 - +1.1
455,132 - -1.6
455,145 - -0.4
455,153 + +0.5
455,281 - Dshi_0469 0.32 -0.3
455,287 - Dshi_0469 0.34 +0.3
455,373 - Dshi_0469 0.58 +0.6
455,383 - Dshi_0469 0.61 +0.4
455,413 + Dshi_0469 0.70 +1.2
455,421 - Dshi_0469 0.72 +1.7
455,487 - -0.2
455,487 - +0.1
455,494 - -1.2
455,511 + +1.7
455,639 + -1.5
455,729 + Dshi_0470 0.17 -0.3
455,763 - Dshi_0470 0.21 -0.5
455,791 + Dshi_0470 0.24 -0.5
455,815 + Dshi_0470 0.27 +0.3
455,815 + Dshi_0470 0.27 -1.5
455,815 + Dshi_0470 0.27 -0.2
455,865 + Dshi_0470 0.32 -1.6
455,908 + Dshi_0470 0.37 +0.1
455,921 - Dshi_0470 0.39 +1.0
456,036 - Dshi_0470 0.52 +1.7
456,043 - Dshi_0470 0.53 -0.3
456,072 + Dshi_0470 0.56 +1.7
456,075 + Dshi_0470 0.56 -0.0
456,082 - Dshi_0470 0.57 -0.2
456,093 - Dshi_0470 0.59 -0.0
456,170 - Dshi_0470 0.67 -0.3
456,190 - Dshi_0470 0.70 -0.2
456,218 - Dshi_0470 0.73 -0.2
456,225 + Dshi_0470 0.74 -1.5
456,261 - Dshi_0470 0.78 +0.1
456,346 - Dshi_0470 0.88 -0.0
456,411 + -1.5
456,424 - -0.6
456,473 + +0.1
456,496 + -0.9
456,501 + -0.7
456,506 + -1.9

Or see this region's nucleotide sequence