Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3352 and Rru_A3353 overlap by 4 nucleotides Rru_A3353 and Rru_A3354 are separated by 46 nucleotides Rru_A3354 and Rru_A3355 overlap by 4 nucleotides Rru_A3355 and Rru_A3356 are separated by 52 nucleotides
Rru_A3352: Rru_A3352 - Pseudouridylate synthase (NCBI), at 3,865,771 to 3,866,607
_A3352
Rru_A3353: Rru_A3353 - Small multidrug resistance protein (NCBI), at 3,866,604 to 3,866,924
_A3353
Rru_A3354: Rru_A3354 - Protein of unknown function DUF45 (NCBI), at 3,866,971 to 3,867,768
_A3354
Rru_A3355: Rru_A3355 - Uncharacterized conserved protein UCP006173 (NCBI), at 3,867,765 to 3,868,163
_A3355
Rru_A3356: Rru_A3356 - Polyhydroxyalkanoate depolymerase (NCBI), at 3,868,216 to 3,869,472
_A3356
Position (kb) 3866
3867
3868 Strain fitness (log2 ratio) -1
0
1 at 3866.654 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.718 kb on + strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.719 kb on - strand, within Rru_A3353 at 3866.779 kb on - strand, within Rru_A3353 at 3866.979 kb on - strand at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.116 kb on + strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.117 kb on - strand, within Rru_A3354 at 3867.496 kb on - strand, within Rru_A3354 at 3867.667 kb on - strand, within Rru_A3354 at 3867.790 kb on + strand at 3867.790 kb on + strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.791 kb on - strand at 3867.928 kb on + strand, within Rru_A3355 at 3868.018 kb on + strand, within Rru_A3355 at 3868.019 kb on - strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.037 kb on + strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.038 kb on - strand, within Rru_A3355 at 3868.325 kb on + strand at 3868.326 kb on - strand at 3868.556 kb on + strand, within Rru_A3356 at 3868.556 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.589 kb on + strand, within Rru_A3356 at 3868.598 kb on + strand, within Rru_A3356 at 3868.655 kb on + strand, within Rru_A3356
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 3,866,654 + Rru_A3353 0.16 -1.1 3,866,718 + Rru_A3353 0.36 +0.0 3,866,718 + Rru_A3353 0.36 +0.0 3,866,718 + Rru_A3353 0.36 +0.0 3,866,719 - Rru_A3353 0.36 +0.0 3,866,719 - Rru_A3353 0.36 -1.2 3,866,719 - Rru_A3353 0.36 +0.0 3,866,719 - Rru_A3353 0.36 +0.0 3,866,779 - Rru_A3353 0.55 -1.0 3,866,979 - +0.0 3,867,116 + Rru_A3354 0.18 +0.0 3,867,116 + Rru_A3354 0.18 +0.0 3,867,116 + Rru_A3354 0.18 +0.0 3,867,116 + Rru_A3354 0.18 +0.0 3,867,117 - Rru_A3354 0.18 -1.0 3,867,117 - Rru_A3354 0.18 -1.7 3,867,496 - Rru_A3354 0.66 +0.0 3,867,667 - Rru_A3354 0.87 +0.0 3,867,790 + +0.0 3,867,790 + +0.0 3,867,791 - -1.2 3,867,791 - -0.8 3,867,791 - +0.0 3,867,791 - +0.0 3,867,791 - -0.9 3,867,791 - +0.0 3,867,791 - +0.0 3,867,928 + Rru_A3355 0.41 +0.0 3,868,018 + Rru_A3355 0.63 +0.0 3,868,019 - Rru_A3355 0.64 +0.0 3,868,037 + Rru_A3355 0.68 +0.0 3,868,037 + Rru_A3355 0.68 +0.0 3,868,037 + Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 +0.0 3,868,038 - Rru_A3355 0.68 -1.2 3,868,325 + +0.0 3,868,326 - +0.0 3,868,556 + Rru_A3356 0.27 +0.0 3,868,556 + Rru_A3356 0.27 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 -1.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 +0.0 3,868,589 + Rru_A3356 0.30 -1.0 3,868,598 + Rru_A3356 0.30 +0.0 3,868,655 + Rru_A3356 0.35 +0.0
Or see this region's nucleotide sequence