Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2352

Experiment: SMN_rich_anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0046 and Rru_A2352 are separated by 606 nucleotidesRru_A2352 and Rru_A2353 are separated by 6 nucleotides Rru_AR0046: Rru_AR0046 - 16S ribosomal RNA (NCBI), at 2,735,650 to 2,737,126 _AR0046 Rru_A2352: Rru_A2352 - hypothetical protein (NCBI), at 2,737,733 to 2,738,110 _A2352 Rru_A2353: Rru_A2353 - Tetratricopeptide TPR_4 (NCBI), at 2,738,117 to 2,739,718 _A2353 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -2 -1 0 1at 2737.798 kb on + strand, within Rru_A2352at 2737.956 kb on + strand, within Rru_A2352at 2738.000 kb on + strand, within Rru_A2352at 2738.001 kb on - strand, within Rru_A2352at 2738.023 kb on + strand, within Rru_A2352at 2738.032 kb on - strand, within Rru_A2352at 2738.032 kb on - strand, within Rru_A2352at 2738.086 kb on + strandat 2738.086 kb on + strandat 2738.087 kb on - strandat 2738.119 kb on - strandat 2738.233 kb on + strandat 2738.233 kb on + strandat 2738.233 kb on + strandat 2738.233 kb on + strandat 2738.233 kb on + strandat 2738.254 kb on + strandat 2738.254 kb on + strandat 2738.338 kb on - strand, within Rru_A2353at 2738.338 kb on - strand, within Rru_A2353at 2738.805 kb on + strand, within Rru_A2353at 2738.847 kb on - strand, within Rru_A2353at 2738.870 kb on - strand, within Rru_A2353

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
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2,737,798 + Rru_A2352 0.17 -1.0
2,737,956 + Rru_A2352 0.59 +0.0
2,738,000 + Rru_A2352 0.71 +0.0
2,738,001 - Rru_A2352 0.71 +0.0
2,738,023 + Rru_A2352 0.77 +0.0
2,738,032 - Rru_A2352 0.79 -2.0
2,738,032 - Rru_A2352 0.79 +0.0
2,738,086 + +0.0
2,738,086 + +0.0
2,738,087 - +0.0
2,738,119 - -1.2
2,738,233 + -0.9
2,738,233 + -1.1
2,738,233 + +0.0
2,738,233 + +0.0
2,738,233 + -1.0
2,738,254 + -0.9
2,738,254 + +0.0
2,738,338 - Rru_A2353 0.14 -1.2
2,738,338 - Rru_A2353 0.14 +0.0
2,738,805 + Rru_A2353 0.43 -1.2
2,738,847 - Rru_A2353 0.46 +0.0
2,738,870 - Rru_A2353 0.47 +0.0

Or see this region's nucleotide sequence