Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0939

Experiment: SMN_rich_anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0938 and Rru_A0939 are separated by 215 nucleotidesRru_A0939 and Rru_A0940 are separated by 42 nucleotides Rru_A0938: Rru_A0938 - Glycosyl transferase, family 2 (NCBI), at 1,117,496 to 1,118,449 _A0938 Rru_A0939: Rru_A0939 - DNA ligase (NAD+) (NCBI), at 1,118,665 to 1,120,761 _A0939 Rru_A0940: Rru_A0940 - DNA repair protein RecN (NCBI), at 1,120,804 to 1,122,537 _A0940 Position (kb) 1118 1119 1120 1121Strain fitness (log2 ratio) -2 -1 0 1at 1117.903 kb on + strand, within Rru_A0938at 1117.903 kb on + strand, within Rru_A0938at 1117.904 kb on - strand, within Rru_A0938at 1118.010 kb on - strand, within Rru_A0938at 1118.183 kb on + strand, within Rru_A0938at 1118.183 kb on + strand, within Rru_A0938at 1118.183 kb on + strand, within Rru_A0938at 1118.184 kb on - strand, within Rru_A0938at 1118.184 kb on - strand, within Rru_A0938at 1118.184 kb on - strand, within Rru_A0938at 1118.239 kb on + strand, within Rru_A0938at 1118.239 kb on + strand, within Rru_A0938at 1118.418 kb on + strandat 1118.587 kb on + strandat 1118.587 kb on + strandat 1118.588 kb on - strandat 1118.588 kb on - strandat 1118.588 kb on - strandat 1118.588 kb on - strandat 1118.588 kb on - strandat 1118.593 kb on + strandat 1121.451 kb on - strand, within Rru_A0940at 1121.643 kb on + strand, within Rru_A0940at 1121.644 kb on - strand, within Rru_A0940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
remove
1,117,903 + Rru_A0938 0.43 +0.0
1,117,903 + Rru_A0938 0.43 +0.0
1,117,904 - Rru_A0938 0.43 +0.0
1,118,010 - Rru_A0938 0.54 +0.0
1,118,183 + Rru_A0938 0.72 +0.0
1,118,183 + Rru_A0938 0.72 -0.8
1,118,183 + Rru_A0938 0.72 +0.0
1,118,184 - Rru_A0938 0.72 -0.6
1,118,184 - Rru_A0938 0.72 -0.9
1,118,184 - Rru_A0938 0.72 +0.0
1,118,239 + Rru_A0938 0.78 -2.0
1,118,239 + Rru_A0938 0.78 +0.0
1,118,418 + +0.0
1,118,587 + -0.7
1,118,587 + +0.0
1,118,588 - -0.8
1,118,588 - -1.0
1,118,588 - +0.0
1,118,588 - +0.0
1,118,588 - +0.0
1,118,593 + -2.0
1,121,451 - Rru_A0940 0.37 +0.0
1,121,643 + Rru_A0940 0.48 +0.0
1,121,644 - Rru_A0940 0.48 +0.0

Or see this region's nucleotide sequence