Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0572 and Rru_A0573 overlap by 11 nucleotides Rru_A0573 and Rru_A0574 are separated by 108 nucleotides
Rru_A0572: Rru_A0572 - 4-hydroxybenzoate polyprenyl transferase (NCBI), at 679,120 to 680,043
_A0572
Rru_A0573: Rru_A0573 - hypothetical protein (NCBI), at 680,033 to 680,683
_A0573
Rru_A0574: Rru_A0574 - Carboxylyase-related protein (NCBI), at 680,792 to 682,315
_A0574
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.035 kb on + strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.036 kb on - strand at 679.040 kb on + strand at 679.047 kb on + strand at 679.047 kb on + strand at 679.049 kb on + strand at 679.049 kb on + strand at 679.050 kb on - strand at 680.111 kb on + strand, within Rru_A0573 at 680.111 kb on + strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.112 kb on - strand, within Rru_A0573 at 680.186 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.609 kb on + strand, within Rru_A0573 at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.721 kb on + strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.722 kb on - strand at 680.843 kb on - strand at 680.970 kb on - strand, within Rru_A0574 at 680.992 kb on + strand, within Rru_A0574 at 680.993 kb on - strand, within Rru_A0574
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 679,035 + -1.1 679,035 + -0.0 679,035 + -0.0 679,035 + -0.0 679,035 + -1.5 679,036 - -0.0 679,036 - -0.0 679,036 - -0.0 679,036 - -0.0 679,036 - -0.0 679,040 + -0.0 679,047 + -0.0 679,047 + -1.1 679,049 + -0.0 679,049 + -0.0 679,050 - -0.0 680,111 + Rru_A0573 0.12 -0.0 680,111 + Rru_A0573 0.12 -0.0 680,112 - Rru_A0573 0.12 -1.7 680,112 - Rru_A0573 0.12 -0.0 680,112 - Rru_A0573 0.12 -1.3 680,186 + Rru_A0573 0.24 -0.0 680,609 + Rru_A0573 0.88 -0.0 680,609 + Rru_A0573 0.88 -0.0 680,609 + Rru_A0573 0.88 -0.0 680,721 + -1.1 680,721 + -0.0 680,721 + -0.0 680,721 + -0.0 680,721 + -0.0 680,721 + -0.0 680,722 - -0.0 680,722 - -0.0 680,722 - -1.0 680,722 - -0.0 680,843 - -0.0 680,970 - Rru_A0574 0.12 -0.0 680,992 + Rru_A0574 0.13 -1.9 680,993 - Rru_A0574 0.13 -1.2
Or see this region's nucleotide sequence