Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0459

Experiment: SMN_rich_anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0458 and Rru_A0459 are separated by 791 nucleotidesRru_A0459 and Rru_A0460 are separated by 121 nucleotidesRru_A0460 and Rru_A0461 are separated by 105 nucleotides Rru_A0458: Rru_A0458 - hypothetical protein (NCBI), at 537,511 to 538,188 _A0458 Rru_A0459: Rru_A0459 - hypothetical protein (NCBI), at 538,980 to 539,894 _A0459 Rru_A0460: Rru_A0460 - NADP oxidoreductase, coenzyme F420-dependent (NCBI), at 540,016 to 540,642 _A0460 Rru_A0461: Rru_A0461 - Transcriptional Regulator, LysR family (NCBI), at 540,748 to 541,641 _A0461 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1at 538.013 kb on - strand, within Rru_A0458at 538.069 kb on + strand, within Rru_A0458at 538.069 kb on + strand, within Rru_A0458at 538.069 kb on + strand, within Rru_A0458at 538.070 kb on - strand, within Rru_A0458at 538.070 kb on - strand, within Rru_A0458at 538.070 kb on - strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.071 kb on + strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.072 kb on - strand, within Rru_A0458at 538.307 kb on - strandat 538.319 kb on + strandat 538.320 kb on - strandat 538.549 kb on + strandat 538.655 kb on - strandat 538.767 kb on + strandat 538.767 kb on + strandat 538.767 kb on + strandat 538.768 kb on - strandat 538.795 kb on - strandat 538.898 kb on - strandat 538.916 kb on + strandat 538.917 kb on - strandat 538.968 kb on + strandat 538.969 kb on - strandat 539.035 kb on + strandat 539.035 kb on + strandat 539.200 kb on + strand, within Rru_A0459at 539.200 kb on + strand, within Rru_A0459at 539.201 kb on - strand, within Rru_A0459at 539.213 kb on + strand, within Rru_A0459at 539.214 kb on - strand, within Rru_A0459at 539.278 kb on + strand, within Rru_A0459at 539.278 kb on + strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.428 kb on + strand, within Rru_A0459at 539.429 kb on - strand, within Rru_A0459at 539.472 kb on - strand, within Rru_A0459at 539.481 kb on + strand, within Rru_A0459at 539.519 kb on + strand, within Rru_A0459at 539.546 kb on - strand, within Rru_A0459at 539.683 kb on - strand, within Rru_A0459at 539.698 kb on + strand, within Rru_A0459at 539.699 kb on - strand, within Rru_A0459at 539.735 kb on + strand, within Rru_A0459at 539.858 kb on + strandat 539.859 kb on - strandat 539.893 kb on - strandat 539.893 kb on - strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.900 kb on + strandat 539.901 kb on - strandat 539.901 kb on - strandat 539.901 kb on - strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.075 kb on - strandat 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.627 kb on + strandat 540.627 kb on + strandat 540.628 kb on - strandat 540.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
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538,013 - Rru_A0458 0.74 -1.6
538,069 + Rru_A0458 0.82 -0.8
538,069 + Rru_A0458 0.82 -1.0
538,069 + Rru_A0458 0.82 -0.0
538,070 - Rru_A0458 0.82 -0.0
538,070 - Rru_A0458 0.82 -0.0
538,070 - Rru_A0458 0.82 -0.0
538,071 + Rru_A0458 0.83 -1.0
538,071 + Rru_A0458 0.83 -1.0
538,071 + Rru_A0458 0.83 -0.0
538,071 + Rru_A0458 0.83 -1.3
538,071 + Rru_A0458 0.83 -0.0
538,071 + Rru_A0458 0.83 -0.0
538,071 + Rru_A0458 0.83 -0.0
538,072 - Rru_A0458 0.83 -0.0
538,072 - Rru_A0458 0.83 -0.0
538,072 - Rru_A0458 0.83 -1.5
538,072 - Rru_A0458 0.83 -0.0
538,072 - Rru_A0458 0.83 -0.0
538,072 - Rru_A0458 0.83 -1.4
538,307 - -1.3
538,319 + -0.0
538,320 - -0.0
538,549 + -0.0
538,655 - -1.6
538,767 + -2.0
538,767 + -0.0
538,767 + -0.0
538,768 - -0.0
538,795 - -0.0
538,898 - -0.0
538,916 + -0.0
538,917 - -1.3
538,968 + -0.0
538,969 - -0.0
539,035 + -0.0
539,035 + -0.0
539,200 + Rru_A0459 0.24 -0.0
539,200 + Rru_A0459 0.24 -1.6
539,201 - Rru_A0459 0.24 -0.0
539,213 + Rru_A0459 0.25 -1.0
539,214 - Rru_A0459 0.26 -1.0
539,278 + Rru_A0459 0.33 -1.0
539,278 + Rru_A0459 0.33 -1.4
539,279 - Rru_A0459 0.33 -0.0
539,279 - Rru_A0459 0.33 -0.0
539,279 - Rru_A0459 0.33 -0.0
539,279 - Rru_A0459 0.33 -0.0
539,428 + Rru_A0459 0.49 -0.0
539,429 - Rru_A0459 0.49 -0.0
539,472 - Rru_A0459 0.54 -0.0
539,481 + Rru_A0459 0.55 -1.0
539,519 + Rru_A0459 0.59 -0.0
539,546 - Rru_A0459 0.62 -2.0
539,683 - Rru_A0459 0.77 -1.2
539,698 + Rru_A0459 0.78 -0.0
539,699 - Rru_A0459 0.79 -0.0
539,735 + Rru_A0459 0.83 -0.0
539,858 + -1.6
539,859 - -0.0
539,893 - -0.0
539,893 - -0.0
539,898 + -1.2
539,898 + -0.0
539,898 + +1.0
539,898 + -0.0
539,900 + -1.3
539,901 - -0.0
539,901 - -0.0
539,901 - -0.0
540,074 + -0.0
540,074 + -0.0
540,074 + -0.0
540,074 + -0.0
540,075 - -1.5
540,377 + Rru_A0460 0.58 -0.0
540,377 + Rru_A0460 0.58 -0.0
540,377 + Rru_A0460 0.58 -0.0
540,377 + Rru_A0460 0.58 -1.1
540,378 - Rru_A0460 0.58 -0.0
540,378 - Rru_A0460 0.58 -1.2
540,378 - Rru_A0460 0.58 -0.8
540,378 - Rru_A0460 0.58 -0.0
540,378 - Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -2.6
540,381 + Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -1.1
540,381 + Rru_A0460 0.58 -0.0
540,381 + Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -1.2
540,382 - Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -1.2
540,627 + -0.0
540,627 + -0.0
540,628 - -0.0
540,628 - -0.0

Or see this region's nucleotide sequence