Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0248

Experiment: SMN_rich_anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0247 and Rru_A0248 are separated by 56 nucleotidesRru_A0248 and Rru_A0249 are separated by 74 nucleotides Rru_A0247: Rru_A0247 - Periplasmic binding protein/LacI transcriptional regulator (NCBI), at 307,299 to 308,303 _A0247 Rru_A0248: Rru_A0248 - inner-membrane translocator (NCBI), at 308,360 to 309,376 _A0248 Rru_A0249: Rru_A0249 - ABC transporter component (NCBI), at 309,451 to 310,932 _A0249 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 307.363 kb on + strandat 307.363 kb on + strandat 307.405 kb on + strand, within Rru_A0247at 307.405 kb on + strand, within Rru_A0247at 307.405 kb on + strand, within Rru_A0247at 307.406 kb on - strand, within Rru_A0247at 307.435 kb on + strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 308.017 kb on + strand, within Rru_A0247at 308.017 kb on + strand, within Rru_A0247at 308.018 kb on - strand, within Rru_A0247at 308.018 kb on - strand, within Rru_A0247at 308.098 kb on + strand, within Rru_A0247at 308.098 kb on + strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.162 kb on - strand, within Rru_A0247at 308.162 kb on - strand, within Rru_A0247at 308.192 kb on + strand, within Rru_A0247at 308.192 kb on + strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.201 kb on - strand, within Rru_A0247at 308.286 kb on - strandat 308.334 kb on - strandat 308.434 kb on - strandat 308.434 kb on - strandat 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.742 kb on + strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 309.043 kb on - strand, within Rru_A0248at 309.195 kb on - strand, within Rru_A0248at 309.221 kb on - strand, within Rru_A0248at 309.410 kb on - strandat 309.410 kb on - strandat 309.410 kb on - strandat 309.413 kb on - strandat 309.453 kb on - strandat 309.627 kb on - strand, within Rru_A0249at 309.627 kb on - strand, within Rru_A0249at 309.627 kb on - strand, within Rru_A0249at 309.853 kb on - strand, within Rru_A0249at 309.912 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 309.935 kb on + strand, within Rru_A0249at 310.022 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.031 kb on + strand, within Rru_A0249at 310.032 kb on - strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.076 kb on + strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.077 kb on - strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.193 kb on + strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.194 kb on - strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.296 kb on + strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.297 kb on - strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.298 kb on + strand, within Rru_A0249at 310.299 kb on - strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.343 kb on + strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249at 310.344 kb on - strand, within Rru_A0249

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
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307,363 + -1.0
307,363 + -1.3
307,405 + Rru_A0247 0.11 +0.0
307,405 + Rru_A0247 0.11 -1.0
307,405 + Rru_A0247 0.11 +0.0
307,406 - Rru_A0247 0.11 +0.0
307,435 + Rru_A0247 0.14 -1.2
307,436 - Rru_A0247 0.14 +0.0
307,436 - Rru_A0247 0.14 +0.0
307,436 - Rru_A0247 0.14 -1.4
308,017 + Rru_A0247 0.71 +0.0
308,017 + Rru_A0247 0.71 -1.4
308,018 - Rru_A0247 0.72 +0.0
308,018 - Rru_A0247 0.72 +0.0
308,098 + Rru_A0247 0.80 +0.0
308,098 + Rru_A0247 0.80 +0.0
308,111 - Rru_A0247 0.81 +0.0
308,111 - Rru_A0247 0.81 +0.0
308,111 - Rru_A0247 0.81 +0.0
308,162 - Rru_A0247 0.86 +0.0
308,162 - Rru_A0247 0.86 +0.0
308,192 + Rru_A0247 0.89 +0.0
308,192 + Rru_A0247 0.89 +0.0
308,193 - Rru_A0247 0.89 +0.0
308,193 - Rru_A0247 0.89 +0.0
308,193 - Rru_A0247 0.89 -1.2
308,193 - Rru_A0247 0.89 +0.0
308,200 + Rru_A0247 0.90 +0.0
308,200 + Rru_A0247 0.90 +0.0
308,200 + Rru_A0247 0.90 -1.2
308,201 - Rru_A0247 0.90 +0.0
308,286 - -0.9
308,334 - +0.0
308,434 - +0.0
308,434 - +0.0
308,577 + Rru_A0248 0.21 +0.0
308,577 + Rru_A0248 0.21 +0.0
308,577 + Rru_A0248 0.21 +0.0
308,578 - Rru_A0248 0.21 -1.0
308,578 - Rru_A0248 0.21 +0.0
308,664 + Rru_A0248 0.30 +0.0
308,664 + Rru_A0248 0.30 -0.9
308,664 + Rru_A0248 0.30 +0.0
308,664 + Rru_A0248 0.30 +0.0
308,664 + Rru_A0248 0.30 -1.0
308,664 + Rru_A0248 0.30 +0.0
308,665 - Rru_A0248 0.30 -1.0
308,665 - Rru_A0248 0.30 -1.1
308,736 + Rru_A0248 0.37 +0.0
308,736 + Rru_A0248 0.37 +0.0
308,736 + Rru_A0248 0.37 +0.0
308,736 + Rru_A0248 0.37 -2.1
308,737 - Rru_A0248 0.37 -1.2
308,737 - Rru_A0248 0.37 -1.0
308,742 + Rru_A0248 0.38 +0.0
308,762 - Rru_A0248 0.40 +0.0
308,762 - Rru_A0248 0.40 +0.0
309,043 - Rru_A0248 0.67 -0.9
309,195 - Rru_A0248 0.82 +0.0
309,221 - Rru_A0248 0.85 +0.0
309,410 - -1.0
309,410 - +0.0
309,410 - +0.0
309,413 - -1.0
309,453 - +0.0
309,627 - Rru_A0249 0.12 -1.0
309,627 - Rru_A0249 0.12 +0.0
309,627 - Rru_A0249 0.12 -1.1
309,853 - Rru_A0249 0.27 +0.0
309,912 + Rru_A0249 0.31 +0.0
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 -1.1
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 +0.0
309,935 + Rru_A0249 0.33 +0.0
310,022 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,031 + Rru_A0249 0.39 +0.0
310,032 - Rru_A0249 0.39 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 -1.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,076 + Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 -1.3
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 -1.1
310,077 - Rru_A0249 0.42 +0.0
310,077 - Rru_A0249 0.42 -1.0
310,077 - Rru_A0249 0.42 -1.6
310,077 - Rru_A0249 0.42 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 +0.0
310,193 + Rru_A0249 0.50 -1.1
310,193 + Rru_A0249 0.50 -1.4
310,193 + Rru_A0249 0.50 -1.0
310,193 + Rru_A0249 0.50 +0.0
310,194 - Rru_A0249 0.50 +0.0
310,194 - Rru_A0249 0.50 -1.0
310,296 + Rru_A0249 0.57 -0.8
310,296 + Rru_A0249 0.57 +0.0
310,296 + Rru_A0249 0.57 -1.0
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 +0.0
310,297 - Rru_A0249 0.57 -1.2
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 -1.6
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,298 + Rru_A0249 0.57 +0.0
310,299 - Rru_A0249 0.57 -1.0
310,343 + Rru_A0249 0.60 -0.4
310,343 + Rru_A0249 0.60 -0.9
310,343 + Rru_A0249 0.60 +0.0
310,343 + Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 -2.0
310,344 - Rru_A0249 0.60 +0.0
310,344 - Rru_A0249 0.60 +0.0

Or see this region's nucleotide sequence